Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
HOXA9P31269 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HOXA9P31269 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
HOXA9P31269 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
HOXA9P31269 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.21□□□□□ -1.58
HOXA9P31269 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
HOXA9P31269 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.21□□□□□ -1.58
HOXA9P31269 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
HOXA9P31269 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA9P31269 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA9P31269 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.2□□□□□ -1.58
HOXA9P31269 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
HOXA9P31269 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA9P31269 RNA5SP191-201ENST00000362585 102 ntBASIC5.2□□□□□ -1.58
HOXA9P31269 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA9P31269 AC114755.2-201ENST00000413520 361 ntBASIC5.2□□□□□ -1.58
HOXA9P31269 IGKV1OR9-1-201ENST00000424370 284 ntBASIC5.2□□□□□ -1.58
HOXA9P31269 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.2□□□□□ -1.58
HOXA9P31269 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
HOXA9P31269 MTND6P5-201ENST00000448266 512 ntBASIC5.2□□□□□ -1.58
HOXA9P31269 AC010326.1-201ENST00000462726 602 ntBASIC5.2□□□□□ -1.58
HOXA9P31269 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.2□□□□□ -1.58
HOXA9P31269 NDUFA5P9-201ENST00000472609 340 ntBASIC5.2□□□□□ -1.58
HOXA9P31269 AC116562.1-201ENST00000485355 781 ntBASIC5.2□□□□□ -1.58
HOXA9P31269 AC005412.2-201ENST00000492004 341 ntBASIC5.2□□□□□ -1.58
HOXA9P31269 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC5.2□□□□□ -1.58
HOXA9P31269 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC5.2□□□□□ -1.58
HOXA9P31269 AC021193.1-201ENST00000511607 420 ntBASIC5.2□□□□□ -1.58
HOXA9P31269 RN7SKP276-201ENST00000516242 268 ntBASIC5.2□□□□□ -1.58
HOXA9P31269 FTH1P11-201ENST00000517577 551 ntBASIC5.2□□□□□ -1.58
HOXA9P31269 SOX5P1-201ENST00000524155 1127 ntBASIC5.2□□□□□ -1.58
HOXA9P31269 AC130364.2-201ENST00000528639 604 ntBASIC5.2□□□□□ -1.58
HOXA9P31269 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC5.2□□□□□ -1.58
HOXA9P31269 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA9P31269 AL358913.1-201ENST00000554342 121 ntBASIC5.2□□□□□ -1.58
HOXA9P31269 NDUFB4P11-201ENST00000560510 395 ntBASIC5.2□□□□□ -1.58
HOXA9P31269 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC5.2□□□□□ -1.58
HOXA9P31269 AC091932.2-201ENST00000623014 291 ntBASIC5.2□□□□□ -1.58
HOXA9P31269 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.2□□□□□ -1.58
HOXA9P31269 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC5.2□□□□□ -1.58
HOXA9P31269 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA9P31269 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA9P31269 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
HOXA9P31269 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA9P31269 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.2□□□□□ -1.58
HOXA9P31269 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
HOXA9P31269 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA9P31269 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA9P31269 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA9P31269 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
HOXA9P31269 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HOXA9P31269 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC5.19□□□□□ -1.58
HOXA9P31269 TCP11X1-202ENST00000622971 1372 ntBASIC5.19□□□□□ -1.58
HOXA9P31269 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HOXA9P31269 OR1L6-202ENST00000373684 1044 ntBASIC5.19□□□□□ -1.58
HOXA9P31269 RNA5SP241-201ENST00000391326 114 ntBASIC5.19□□□□□ -1.58
HOXA9P31269 SNORA79B-201ENST00000410557 148 ntBASIC5.19□□□□□ -1.58
HOXA9P31269 EIF2S2P3-201ENST00000428356 999 ntBASIC5.19□□□□□ -1.58
HOXA9P31269 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC5.19□□□□□ -1.58
HOXA9P31269 AC068287.1-201ENST00000430283 295 ntBASIC5.19□□□□□ -1.58
HOXA9P31269 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC5.19□□□□□ -1.58
HOXA9P31269 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC5.19□□□□□ -1.58
HOXA9P31269 SSR3-206ENST00000476217 807 ntTSL 3 BASIC5.19□□□□□ -1.58
HOXA9P31269 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC5.19□□□□□ -1.58
HOXA9P31269 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC5.19□□□□□ -1.58
HOXA9P31269 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC5.19□□□□□ -1.58
HOXA9P31269 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC5.19□□□□□ -1.58
HOXA9P31269 AP001880.2-201ENST00000538233 448 ntBASIC5.19□□□□□ -1.58
HOXA9P31269 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC5.19□□□□□ -1.58
HOXA9P31269 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC5.19□□□□□ -1.58
HOXA9P31269 MIR4284-201ENST00000578924 81 ntBASIC5.19□□□□□ -1.58
HOXA9P31269 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.19□□□□□ -1.58
HOXA9P31269 AC010503.3-201ENST00000594355 540 ntBASIC5.19□□□□□ -1.58
HOXA9P31269 AC108359.1-201ENST00000616451 1211 ntBASIC5.19□□□□□ -1.58
HOXA9P31269 AL731566.2-201ENST00000618971 317 ntBASIC5.19□□□□□ -1.58
HOXA9P31269 AC026367.3-201ENST00000619032 590 ntBASIC5.19□□□□□ -1.58
HOXA9P31269 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.19□□□□□ -1.58
HOXA9P31269 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA9P31269 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA9P31269 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA9P31269 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC5.18□□□□□ -1.58
HOXA9P31269 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA9P31269 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
HOXA9P31269 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA9P31269 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.18□□□□□ -1.58
HOXA9P31269 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA9P31269 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.18□□□□□ -1.58
HOXA9P31269 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA9P31269 RNA5-8SP7-201ENST00000363443 155 ntBASIC5.18□□□□□ -1.58
HOXA9P31269 SNORA62-201ENST00000365493 153 ntBASIC5.18□□□□□ -1.58
HOXA9P31269 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXA9P31269 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA9P31269 SNORA70.10-201ENST00000384515 134 ntBASIC5.18□□□□□ -1.58
HOXA9P31269 GLULP6-201ENST00000399502 913 ntBASIC5.18□□□□□ -1.58
HOXA9P31269 SLC9B1P4-201ENST00000421957 1288 ntBASIC5.18□□□□□ -1.58
HOXA9P31269 AC016712.1-201ENST00000431088 378 ntBASIC5.18□□□□□ -1.58
HOXA9P31269 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC5.18□□□□□ -1.58
HOXA9P31269 AC005154.2-201ENST00000438110 379 ntBASIC5.18□□□□□ -1.58
HOXA9P31269 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
HOXA9P31269 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms