Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.88
SHROOM4Q9ULL8 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.88
SHROOM4Q9ULL8 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC9.52□□□□□ -0.88
SHROOM4Q9ULL8 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC9.52□□□□□ -0.88
SHROOM4Q9ULL8 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC9.52□□□□□ -0.88
SHROOM4Q9ULL8 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC9.52□□□□□ -0.88
SHROOM4Q9ULL8 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
SHROOM4Q9ULL8 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC9.52□□□□□ -0.89
SHROOM4Q9ULL8 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
SHROOM4Q9ULL8 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC9.52□□□□□ -0.89
SHROOM4Q9ULL8 TEK-204ENST00000519097 3836 ntTSL 2 BASIC9.52□□□□□ -0.89
SHROOM4Q9ULL8 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC9.52□□□□□ -0.89
SHROOM4Q9ULL8 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
SHROOM4Q9ULL8 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC9.52□□□□□ -0.89
SHROOM4Q9ULL8 MRPS21P2-201ENST00000424704 264 ntBASIC9.52□□□□□ -0.89
SHROOM4Q9ULL8 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC9.52□□□□□ -0.89
SHROOM4Q9ULL8 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC9.52□□□□□ -0.89
SHROOM4Q9ULL8 RPL12P20-201ENST00000475538 479 ntBASIC9.52□□□□□ -0.89
SHROOM4Q9ULL8 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC9.52□□□□□ -0.89
SHROOM4Q9ULL8 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC9.52□□□□□ -0.89
SHROOM4Q9ULL8 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC9.52□□□□□ -0.89
SHROOM4Q9ULL8 SSX9-202ENST00000608568 580 ntTSL 4 BASIC9.52□□□□□ -0.89
SHROOM4Q9ULL8 CA1-225ENST00000626824 2405 ntTSL 5 BASIC9.52□□□□□ -0.89
SHROOM4Q9ULL8 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC9.52□□□□□ -0.89
SHROOM4Q9ULL8 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC9.52□□□□□ -0.89
SHROOM4Q9ULL8 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC9.52□□□□□ -0.89
SHROOM4Q9ULL8 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC9.52□□□□□ -0.89
SHROOM4Q9ULL8 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC9.52□□□□□ -0.89
SHROOM4Q9ULL8 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
SHROOM4Q9ULL8 AL137100.1-201ENST00000556703 1620 ntBASIC9.52□□□□□ -0.89
SHROOM4Q9ULL8 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 OR56B2P-202ENST00000641377 2453 ntBASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 RNU4-23P-201ENST00000362839 140 ntBASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 AL049697.2-201ENST00000403708 294 ntBASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 RPS20P25-201ENST00000412447 352 ntBASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 YY1P1-201ENST00000427625 668 ntBASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 RPL19P16-201ENST00000433839 588 ntBASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 MTND2P40-201ENST00000436718 841 ntBASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 AC019322.1-201ENST00000571869 389 ntBASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 AC020910.3-201ENST00000603701 874 ntBASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
SHROOM4Q9ULL8 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
SHROOM4Q9ULL8 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
SHROOM4Q9ULL8 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
SHROOM4Q9ULL8 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC9.5□□□□□ -0.89
SHROOM4Q9ULL8 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC9.5□□□□□ -0.89
SHROOM4Q9ULL8 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC9.5□□□□□ -0.89
SHROOM4Q9ULL8 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
SHROOM4Q9ULL8 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
SHROOM4Q9ULL8 SNORA2.3-201ENST00000383920 135 ntBASIC9.5□□□□□ -0.89
SHROOM4Q9ULL8 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC9.5□□□□□ -0.89
SHROOM4Q9ULL8 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC9.5□□□□□ -0.89
SHROOM4Q9ULL8 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC9.5□□□□□ -0.89
SHROOM4Q9ULL8 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC9.5□□□□□ -0.89
SHROOM4Q9ULL8 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC9.5□□□□□ -0.89
SHROOM4Q9ULL8 RN7SKP92-201ENST00000517266 244 ntBASIC9.5□□□□□ -0.89
SHROOM4Q9ULL8 NPM1P52-201ENST00000518264 846 ntBASIC9.5□□□□□ -0.89
SHROOM4Q9ULL8 SOX5P1-201ENST00000524155 1127 ntBASIC9.5□□□□□ -0.89
SHROOM4Q9ULL8 AC133555.2-201ENST00000550213 292 ntBASIC9.5□□□□□ -0.89
SHROOM4Q9ULL8 AC005191.1-201ENST00000603950 358 ntBASIC9.5□□□□□ -0.89
SHROOM4Q9ULL8 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC9.5□□□□□ -0.89
SHROOM4Q9ULL8 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC9.5□□□□□ -0.89
SHROOM4Q9ULL8 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
SHROOM4Q9ULL8 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
SHROOM4Q9ULL8 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
SHROOM4Q9ULL8 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 AC097063.1-201ENST00000426714 1797 ntBASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 RNU4-39P-201ENST00000362455 127 ntBASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 AL021331.1-201ENST00000402817 582 ntBASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 CBX1P3-201ENST00000413296 527 ntBASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 AL161722.2-201ENST00000434731 981 ntBASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 AC023271.1-201ENST00000445936 1090 ntBASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 AC010733.1-201ENST00000451515 401 ntBASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 RPS24P16-201ENST00000497294 392 ntBASIC9.49□□□□□ -0.89
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms