Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 SNORA73.1-201ENST00000363107 205 ntBASIC5.02□□□□□ -1.61
LHX3Q9UBR4 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC5.02□□□□□ -1.61
LHX3Q9UBR4 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
LHX3Q9UBR4 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
LHX3Q9UBR4 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC5.02□□□□□ -1.61
LHX3Q9UBR4 GTF2IP5-201ENST00000414608 731 ntBASIC5.02□□□□□ -1.61
LHX3Q9UBR4 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC5.02□□□□□ -1.61
LHX3Q9UBR4 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC5.02□□□□□ -1.61
LHX3Q9UBR4 AC244453.4-201ENST00000419150 388 ntBASIC5.02□□□□□ -1.61
LHX3Q9UBR4 Z85994.2-201ENST00000434327 452 ntBASIC5.02□□□□□ -1.61
LHX3Q9UBR4 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.02□□□□□ -1.61
LHX3Q9UBR4 XKRYP6-201ENST00000440468 1116 ntBASIC5.02□□□□□ -1.61
LHX3Q9UBR4 ARAFP2-201ENST00000440565 559 ntBASIC5.02□□□□□ -1.61
LHX3Q9UBR4 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC5.02□□□□□ -1.61
LHX3Q9UBR4 XKRYP3-201ENST00000442113 1116 ntBASIC5.02□□□□□ -1.61
LHX3Q9UBR4 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC5.02□□□□□ -1.61
LHX3Q9UBR4 AC112498.1-201ENST00000444401 332 ntBASIC5.02□□□□□ -1.61
LHX3Q9UBR4 RAB28P3-201ENST00000448325 597 ntBASIC5.02□□□□□ -1.61
LHX3Q9UBR4 RN7SL591P-201ENST00000496150 292 ntBASIC5.02□□□□□ -1.61
LHX3Q9UBR4 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC5.02□□□□□ -1.61
LHX3Q9UBR4 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC5.02□□□□□ -1.61
LHX3Q9UBR4 AP001922.4-201ENST00000526967 290 ntBASIC5.02□□□□□ -1.61
LHX3Q9UBR4 AC021006.3-201ENST00000530771 192 ntBASIC5.02□□□□□ -1.61
LHX3Q9UBR4 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC5.02□□□□□ -1.61
LHX3Q9UBR4 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.02□□□□□ -1.61
LHX3Q9UBR4 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC5.02□□□□□ -1.61
LHX3Q9UBR4 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC5.02□□□□□ -1.61
LHX3Q9UBR4 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC5.02□□□□□ -1.61
LHX3Q9UBR4 TVP23CP2-201ENST00000571473 623 ntBASIC5.02□□□□□ -1.61
LHX3Q9UBR4 AC016839.1-201ENST00000578162 867 ntBASIC5.02□□□□□ -1.61
LHX3Q9UBR4 AC104687.2-201ENST00000604442 342 ntBASIC5.02□□□□□ -1.61
LHX3Q9UBR4 AF117829.2-201ENST00000619538 361 ntBASIC5.02□□□□□ -1.61
LHX3Q9UBR4 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.02□□□□□ -1.61
LHX3Q9UBR4 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
LHX3Q9UBR4 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
LHX3Q9UBR4 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
LHX3Q9UBR4 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC5.02□□□□□ -1.61
LHX3Q9UBR4 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
LHX3Q9UBR4 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
LHX3Q9UBR4 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.02□□□□□ -1.61
LHX3Q9UBR4 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
LHX3Q9UBR4 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 RN7SKP186-201ENST00000365371 303 ntBASIC5.01□□□□□ -1.61
LHX3Q9UBR4 MIR550A3-201ENST00000390735 95 ntBASIC5.01□□□□□ -1.61
LHX3Q9UBR4 RNU2-22P-201ENST00000411266 212 ntBASIC5.01□□□□□ -1.61
LHX3Q9UBR4 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 TRIM60P17-201ENST00000415181 719 ntBASIC5.01□□□□□ -1.61
LHX3Q9UBR4 COX6B1P1-201ENST00000415962 213 ntBASIC5.01□□□□□ -1.61
LHX3Q9UBR4 QRSL1P2-201ENST00000418582 964 ntBASIC5.01□□□□□ -1.61
LHX3Q9UBR4 MGAT2P2-201ENST00000427194 797 ntBASIC5.01□□□□□ -1.61
LHX3Q9UBR4 PRPF38AP2-201ENST00000438179 851 ntBASIC5.01□□□□□ -1.61
LHX3Q9UBR4 AC073052.1-201ENST00000440417 714 ntBASIC5.01□□□□□ -1.61
LHX3Q9UBR4 CYCSP24-201ENST00000445119 316 ntBASIC5.01□□□□□ -1.61
LHX3Q9UBR4 AC000111.2-201ENST00000448200 210 ntBASIC5.01□□□□□ -1.61
LHX3Q9UBR4 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 ATG10-AS1-201ENST00000504846 648 ntBASIC5.01□□□□□ -1.61
LHX3Q9UBR4 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 AC117525.1-201ENST00000515228 503 ntBASIC5.01□□□□□ -1.61
LHX3Q9UBR4 RNU6-319P-201ENST00000516025 108 ntBASIC5.01□□□□□ -1.61
LHX3Q9UBR4 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 AC009117.1-201ENST00000563948 554 ntBASIC5.01□□□□□ -1.61
LHX3Q9UBR4 MIR4443-201ENST00000585052 53 ntBASIC5.01□□□□□ -1.61
LHX3Q9UBR4 AC011487.3-201ENST00000593607 453 ntBASIC5.01□□□□□ -1.61
LHX3Q9UBR4 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 AC011453.2-201ENST00000603737 729 ntBASIC5.01□□□□□ -1.61
LHX3Q9UBR4 AC087783.2-201ENST00000605070 562 ntBASIC5.01□□□□□ -1.61
LHX3Q9UBR4 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 AC068446.1-201ENST00000556425 1549 ntBASIC5.01□□□□□ -1.61
LHX3Q9UBR4 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
LHX3Q9UBR4 CNOT6LP1-201ENST00000559681 1462 ntBASIC5□□□□□ -1.61
LHX3Q9UBR4 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5□□□□□ -1.61
LHX3Q9UBR4 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
LHX3Q9UBR4 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5□□□□□ -1.61
LHX3Q9UBR4 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
LHX3Q9UBR4 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
LHX3Q9UBR4 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms