Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
NKX3-1Q99801 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
NKX3-1Q99801 OR9G4-201ENST00000302957 984 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC4.6□□□□□ -1.67
NKX3-1Q99801 RNU6-792P-201ENST00000363490 107 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 U3.7-201ENST00000363668 216 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 RN7SKP28-201ENST00000364770 305 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 RN7SKP6-201ENST00000364795 319 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 SNORA79B-201ENST00000410557 148 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC4.6□□□□□ -1.67
NKX3-1Q99801 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC4.6□□□□□ -1.67
NKX3-1Q99801 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC4.6□□□□□ -1.67
NKX3-1Q99801 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC4.6□□□□□ -1.67
NKX3-1Q99801 MTCO2P1-201ENST00000424648 477 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 AC113412.1-201ENST00000425840 504 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 HSPD1P12-201ENST00000429127 1069 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC4.6□□□□□ -1.67
NKX3-1Q99801 GSTM5P1-201ENST00000434751 660 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 AC002504.1-201ENST00000438281 691 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC4.6□□□□□ -1.67
NKX3-1Q99801 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC4.6□□□□□ -1.67
NKX3-1Q99801 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC4.6□□□□□ -1.67
NKX3-1Q99801 EIF2S2P5-201ENST00000457635 968 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC4.6□□□□□ -1.67
NKX3-1Q99801 RPL5P13-201ENST00000462840 709 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 AC078857.1-201ENST00000469870 667 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 RPL7P41-201ENST00000485823 957 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 RN7SL205P-201ENST00000490174 284 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 RPS12P31-201ENST00000491419 398 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
NKX3-1Q99801 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
NKX3-1Q99801 EIF3KP3-201ENST00000514461 639 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 RNA5SP362-201ENST00000516048 118 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 RNU6-513P-201ENST00000516104 104 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC4.6□□□□□ -1.67
NKX3-1Q99801 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC4.6□□□□□ -1.67
NKX3-1Q99801 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC4.6□□□□□ -1.67
NKX3-1Q99801 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC4.6□□□□□ -1.67
NKX3-1Q99801 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC4.6□□□□□ -1.67
NKX3-1Q99801 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC4.6□□□□□ -1.67
NKX3-1Q99801 AC113192.3-201ENST00000529152 742 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC4.6□□□□□ -1.67
NKX3-1Q99801 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
NKX3-1Q99801 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC4.6□□□□□ -1.67
NKX3-1Q99801 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC4.6□□□□□ -1.67
NKX3-1Q99801 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC4.6□□□□□ -1.67
NKX3-1Q99801 AC022884.2-201ENST00000578535 580 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC4.6□□□□□ -1.67
NKX3-1Q99801 BNIP3P39-201ENST00000601077 554 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 MTCO2P22-201ENST00000603246 681 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 ABI1P1-201ENST00000603375 1120 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 FO393422.1-201ENST00000603908 708 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 AL096803.3-201ENST00000609032 532 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 BNIP3P41-202ENST00000616656 861 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 MIR6826-201ENST00000617808 98 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
NKX3-1Q99801 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC4.6□□□□□ -1.67
NKX3-1Q99801 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
NKX3-1Q99801 AL359715.4-201ENST00000606629 1436 ntBASIC4.6□□□□□ -1.67
NKX3-1Q99801 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
NKX3-1Q99801 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
NKX3-1Q99801 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.6□□□□□ -1.67
NKX3-1Q99801 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
NKX3-1Q99801 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.6□□□□□ -1.67
NKX3-1Q99801 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
NKX3-1Q99801 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
NKX3-1Q99801 AC104623.2-202ENST00000623477 4002 ntBASIC4.59□□□□□ -1.67
NKX3-1Q99801 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
NKX3-1Q99801 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
NKX3-1Q99801 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 RNA5SP46-201ENST00000362370 120 ntBASIC4.59□□□□□ -1.67
NKX3-1Q99801 RNU6-249P-201ENST00000363016 102 ntBASIC4.59□□□□□ -1.67
NKX3-1Q99801 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
NKX3-1Q99801 MIR551A-201ENST00000385042 96 ntBASIC4.59□□□□□ -1.67
NKX3-1Q99801 SNORA48.4-201ENST00000391089 134 ntBASIC4.59□□□□□ -1.67
NKX3-1Q99801 RNA5SP105-201ENST00000391123 113 ntBASIC4.59□□□□□ -1.67
NKX3-1Q99801 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 RPL21P67-201ENST00000402896 478 ntBASIC4.59□□□□□ -1.67
NKX3-1Q99801 BMPR1APS1-201ENST00000403332 1598 ntBASIC4.59□□□□□ -1.67
NKX3-1Q99801 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 AC211486.3-201ENST00000412694 621 ntBASIC4.59□□□□□ -1.67
NKX3-1Q99801 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 OR6E1P-201ENST00000414424 923 ntBASIC4.59□□□□□ -1.67
NKX3-1Q99801 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
NKX3-1Q99801 TNPO1P1-201ENST00000423641 1138 ntBASIC4.59□□□□□ -1.67
NKX3-1Q99801 UBE2D3P3-201ENST00000426992 425 ntBASIC4.59□□□□□ -1.67
NKX3-1Q99801 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 AC006326.1-201ENST00000445465 787 ntBASIC4.59□□□□□ -1.67
NKX3-1Q99801 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
NKX3-1Q99801 AL049874.2-201ENST00000492636 288 ntBASIC4.59□□□□□ -1.67
NKX3-1Q99801 SUMO1P1-201ENST00000497904 306 ntBASIC4.59□□□□□ -1.67
NKX3-1Q99801 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 AC016559.2-201ENST00000510759 359 ntBASIC4.59□□□□□ -1.67
NKX3-1Q99801 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 130.4 ms