Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
VPS35Q96QK1 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
VPS35Q96QK1 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
VPS35Q96QK1 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS35Q96QK1 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS35Q96QK1 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS35Q96QK1 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS35Q96QK1 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
VPS35Q96QK1 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS35Q96QK1 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS35Q96QK1 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 NXF4-202ENST00000416098 1465 ntBASIC5.07□□□□□ -1.6
VPS35Q96QK1 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS35Q96QK1 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS35Q96QK1 HSPA8P18-201ENST00000439846 1928 ntBASIC5.07□□□□□ -1.6
VPS35Q96QK1 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS35Q96QK1 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS35Q96QK1 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS35Q96QK1 ZNF652P1-201ENST00000442420 1309 ntBASIC5.07□□□□□ -1.6
VPS35Q96QK1 AC022417.1-201ENST00000624768 1303 ntBASIC5.07□□□□□ -1.6
VPS35Q96QK1 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS35Q96QK1 RNA5SP305-201ENST00000362665 119 ntBASIC5.07□□□□□ -1.6
VPS35Q96QK1 TANK-203ENST00000402568 878 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 RN7SKP247-201ENST00000411094 308 ntBASIC5.07□□□□□ -1.6
VPS35Q96QK1 RPL12P9-201ENST00000412942 488 ntBASIC5.07□□□□□ -1.6
VPS35Q96QK1 COX5BP7-201ENST00000414780 274 ntBASIC5.07□□□□□ -1.6
VPS35Q96QK1 RPL23AP27-201ENST00000415161 451 ntBASIC5.07□□□□□ -1.6
VPS35Q96QK1 ATP6V1G1P7-201ENST00000415853 349 ntBASIC5.07□□□□□ -1.6
VPS35Q96QK1 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS35Q96QK1 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 AL589765.3-201ENST00000446084 462 ntBASIC5.07□□□□□ -1.6
VPS35Q96QK1 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 RNA5SP103-201ENST00000459503 118 ntBASIC5.07□□□□□ -1.6
VPS35Q96QK1 RN7SL443P-201ENST00000464331 290 ntBASIC5.07□□□□□ -1.6
VPS35Q96QK1 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 RN7SL441P-201ENST00000492388 296 ntBASIC5.07□□□□□ -1.6
VPS35Q96QK1 AL049874.2-201ENST00000492636 288 ntBASIC5.07□□□□□ -1.6
VPS35Q96QK1 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 AC147055.1-201ENST00000509261 750 ntBASIC5.07□□□□□ -1.6
VPS35Q96QK1 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS35Q96QK1 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 MIR3691-201ENST00000578066 90 ntBASIC5.07□□□□□ -1.6
VPS35Q96QK1 PRPF19P1-201ENST00000584766 898 ntBASIC5.07□□□□□ -1.6
VPS35Q96QK1 AC009303.3-201ENST00000591103 736 ntBASIC5.07□□□□□ -1.6
VPS35Q96QK1 UBA2-208ENST00000592791 910 ntTSL 2 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 AC107905.1-201ENST00000616204 426 ntBASIC5.07□□□□□ -1.6
VPS35Q96QK1 AC108359.1-201ENST00000616451 1211 ntBASIC5.07□□□□□ -1.6
VPS35Q96QK1 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS35Q96QK1 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
VPS35Q96QK1 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC5.06□□□□□ -1.6
VPS35Q96QK1 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
VPS35Q96QK1 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS35Q96QK1 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
VPS35Q96QK1 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC5.06□□□□□ -1.6
VPS35Q96QK1 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
VPS35Q96QK1 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS35Q96QK1 SNORA2.3-201ENST00000383920 135 ntBASIC5.06□□□□□ -1.6
VPS35Q96QK1 RNU6-1263P-201ENST00000384601 106 ntBASIC5.06□□□□□ -1.6
VPS35Q96QK1 RN7SKP278-201ENST00000410504 342 ntBASIC5.06□□□□□ -1.6
VPS35Q96QK1 PCNPP4-201ENST00000414817 517 ntBASIC5.06□□□□□ -1.6
VPS35Q96QK1 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
VPS35Q96QK1 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC5.06□□□□□ -1.6
VPS35Q96QK1 COX6CP13-201ENST00000428703 226 ntBASIC5.06□□□□□ -1.6
VPS35Q96QK1 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
VPS35Q96QK1 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS35Q96QK1 AL354714.3-201ENST00000447284 493 ntBASIC5.06□□□□□ -1.6
VPS35Q96QK1 NDUFA5P8-201ENST00000449019 346 ntBASIC5.06□□□□□ -1.6
VPS35Q96QK1 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC5.06□□□□□ -1.6
VPS35Q96QK1 AC105918.1-201ENST00000474399 838 ntBASIC5.06□□□□□ -1.6
VPS35Q96QK1 RPSAP50-201ENST00000481955 852 ntBASIC5.06□□□□□ -1.6
VPS35Q96QK1 AC005412.2-201ENST00000492004 341 ntBASIC5.06□□□□□ -1.6
VPS35Q96QK1 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS35Q96QK1 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
VPS35Q96QK1 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS35Q96QK1 AC013701.1-201ENST00000522657 465 ntBASIC5.06□□□□□ -1.6
VPS35Q96QK1 AP000859.1-201ENST00000525536 307 ntBASIC5.06□□□□□ -1.6
VPS35Q96QK1 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC5.06□□□□□ -1.6
VPS35Q96QK1 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS35Q96QK1 AC013244.1-201ENST00000604279 193 ntBASIC5.06□□□□□ -1.6
VPS35Q96QK1 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS35Q96QK1 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC5.06□□□□□ -1.6
VPS35Q96QK1 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 138.3 ms