Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
FOXF1Q12946 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.42□□□□□ -1.7
FOXF1Q12946 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC4.42□□□□□ -1.7
FOXF1Q12946 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
FOXF1Q12946 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
FOXF1Q12946 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.41□□□□□ -1.7
FOXF1Q12946 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXF1Q12946 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXF1Q12946 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.41□□□□□ -1.7
FOXF1Q12946 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXF1Q12946 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
FOXF1Q12946 SAMMSON-226ENST00000642089 1582 ntBASIC4.41□□□□□ -1.7
FOXF1Q12946 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.41□□□□□ -1.7
FOXF1Q12946 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXF1Q12946 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC4.41□□□□□ -1.7
FOXF1Q12946 RPL12P43-201ENST00000420608 499 ntBASIC4.41□□□□□ -1.7
FOXF1Q12946 AC006455.6-201ENST00000426192 893 ntBASIC4.41□□□□□ -1.7
FOXF1Q12946 BRWD1P3-201ENST00000428816 390 ntBASIC4.41□□□□□ -1.7
FOXF1Q12946 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC4.41□□□□□ -1.7
FOXF1Q12946 AC010733.1-201ENST00000451515 401 ntBASIC4.41□□□□□ -1.7
FOXF1Q12946 HIGD1AP8-201ENST00000453927 274 ntBASIC4.41□□□□□ -1.7
FOXF1Q12946 RPL23AP56-201ENST00000460778 453 ntBASIC4.41□□□□□ -1.7
FOXF1Q12946 NDUFB5P1-201ENST00000508134 564 ntBASIC4.41□□□□□ -1.7
FOXF1Q12946 ENPP7P9-201ENST00000514456 627 ntBASIC4.41□□□□□ -1.7
FOXF1Q12946 Y_RNA.719-201ENST00000517156 106 ntBASIC4.41□□□□□ -1.7
FOXF1Q12946 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC4.41□□□□□ -1.7
FOXF1Q12946 HNRNPRP2-201ENST00000528421 743 ntBASIC4.41□□□□□ -1.7
FOXF1Q12946 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC4.41□□□□□ -1.7
FOXF1Q12946 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC4.41□□□□□ -1.7
FOXF1Q12946 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC4.41□□□□□ -1.7
FOXF1Q12946 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC4.41□□□□□ -1.7
FOXF1Q12946 MIR4436B2-201ENST00000581415 91 ntBASIC4.41□□□□□ -1.7
FOXF1Q12946 AP000919.1-201ENST00000582850 985 ntBASIC4.41□□□□□ -1.7
FOXF1Q12946 MIR4436B1-201ENST00000583272 91 ntBASIC4.41□□□□□ -1.7
FOXF1Q12946 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.41□□□□□ -1.7
FOXF1Q12946 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC4.41□□□□□ -1.7
FOXF1Q12946 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.41□□□□□ -1.7
FOXF1Q12946 AP002884.5-201ENST00000595053 1132 ntBASIC4.41□□□□□ -1.7
FOXF1Q12946 AC010424.2-201ENST00000607594 443 ntBASIC4.41□□□□□ -1.7
FOXF1Q12946 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.41□□□□□ -1.7
FOXF1Q12946 AC012414.7-202ENST00000622705 1090 ntBASIC4.41□□□□□ -1.7
FOXF1Q12946 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXF1Q12946 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
FOXF1Q12946 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.41□□□□□ -1.7
FOXF1Q12946 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXF1Q12946 OSBPL9P1-201ENST00000604744 1469 ntBASIC4.41□□□□□ -1.7
FOXF1Q12946 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC4.41□□□□□ -1.7
FOXF1Q12946 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.41□□□□□ -1.7
FOXF1Q12946 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXF1Q12946 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
FOXF1Q12946 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.41□□□□□ -1.7
FOXF1Q12946 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXF1Q12946 MTCO1P7-201ENST00000419523 1542 ntBASIC4.41□□□□□ -1.7
FOXF1Q12946 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC4.4□□□□□ -1.7
FOXF1Q12946 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
FOXF1Q12946 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.4□□□□□ -1.7
FOXF1Q12946 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
FOXF1Q12946 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
FOXF1Q12946 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
FOXF1Q12946 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
FOXF1Q12946 SNORA58B-201ENST00000364259 136 ntBASIC4.4□□□□□ -1.71
FOXF1Q12946 RNA5SP345-201ENST00000410646 108 ntBASIC4.4□□□□□ -1.71
FOXF1Q12946 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4.4□□□□□ -1.71
FOXF1Q12946 NPM1P22-201ENST00000427761 952 ntBASIC4.4□□□□□ -1.71
FOXF1Q12946 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC4.4□□□□□ -1.71
FOXF1Q12946 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.4□□□□□ -1.71
FOXF1Q12946 PA2G4P6-201ENST00000438325 1197 ntBASIC4.4□□□□□ -1.71
FOXF1Q12946 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.4□□□□□ -1.71
FOXF1Q12946 BTF3P6-201ENST00000448054 499 ntBASIC4.4□□□□□ -1.71
FOXF1Q12946 AC234781.3-201ENST00000452540 973 ntBASIC4.4□□□□□ -1.71
FOXF1Q12946 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXF1Q12946 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.4□□□□□ -1.71
FOXF1Q12946 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.4□□□□□ -1.71
FOXF1Q12946 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXF1Q12946 GAPDHP56-201ENST00000506031 988 ntBASIC4.4□□□□□ -1.71
FOXF1Q12946 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4.4□□□□□ -1.71
FOXF1Q12946 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXF1Q12946 UBE2Q2P10-201ENST00000514854 900 ntBASIC4.4□□□□□ -1.71
FOXF1Q12946 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.4□□□□□ -1.71
FOXF1Q12946 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC4.4□□□□□ -1.71
FOXF1Q12946 AP001922.4-201ENST00000526967 290 ntBASIC4.4□□□□□ -1.71
FOXF1Q12946 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXF1Q12946 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC4.4□□□□□ -1.71
FOXF1Q12946 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
FOXF1Q12946 AC009117.1-201ENST00000563948 554 ntBASIC4.4□□□□□ -1.71
FOXF1Q12946 AL390726.5-202ENST00000564800 256 ntBASIC4.4□□□□□ -1.71
FOXF1Q12946 SNORA74C-1-201ENST00000580726 201 ntBASIC4.4□□□□□ -1.71
FOXF1Q12946 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC4.4□□□□□ -1.71
FOXF1Q12946 AC015914.2-201ENST00000618167 288 ntBASIC4.4□□□□□ -1.71
FOXF1Q12946 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC4.4□□□□□ -1.71
FOXF1Q12946 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.4□□□□□ -1.71
FOXF1Q12946 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.4□□□□□ -1.71
FOXF1Q12946 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
FOXF1Q12946 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.4□□□□□ -1.71
FOXF1Q12946 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
FOXF1Q12946 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.4□□□□□ -1.71
FOXF1Q12946 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
FOXF1Q12946 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
FOXF1Q12946 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXF1Q12946 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms