Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
COL4A4P53420 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
COL4A4P53420 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL4A4P53420 OR6C69P-201ENST00000394268 893 ntBASIC5.18□□□□□ -1.58
COL4A4P53420 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC5.18□□□□□ -1.58
COL4A4P53420 GLUD1P9-201ENST00000420997 1173 ntBASIC5.18□□□□□ -1.58
COL4A4P53420 GAS5-208ENST00000425771 242 ntTSL 3 BASIC5.18□□□□□ -1.58
COL4A4P53420 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC5.18□□□□□ -1.58
COL4A4P53420 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC5.18□□□□□ -1.58
COL4A4P53420 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC5.18□□□□□ -1.58
COL4A4P53420 NDUFB4P11-201ENST00000560510 395 ntBASIC5.18□□□□□ -1.58
COL4A4P53420 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC5.18□□□□□ -1.58
COL4A4P53420 AC115286.1-201ENST00000604298 434 ntBASIC5.18□□□□□ -1.58
COL4A4P53420 AL591034.3-201ENST00000605511 685 ntBASIC5.18□□□□□ -1.58
COL4A4P53420 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC5.18□□□□□ -1.58
COL4A4P53420 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL4A4P53420 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL4A4P53420 AC125257.1-201ENST00000560400 2930 ntBASIC5.18□□□□□ -1.58
COL4A4P53420 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL4A4P53420 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
COL4A4P53420 OR2T12-202ENST00000641276 5708 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
COL4A4P53420 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL4A4P53420 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL4A4P53420 AC073136.1-201ENST00000449426 2884 ntBASIC5.18□□□□□ -1.58
COL4A4P53420 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
COL4A4P53420 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL4A4P53420 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC5.18□□□□□ -1.58
COL4A4P53420 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL4A4P53420 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL4A4P53420 AC002525.1-201ENST00000624392 1622 ntBASIC5.18□□□□□ -1.58
COL4A4P53420 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5.18□□□□□ -1.58
COL4A4P53420 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
COL4A4P53420 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL4A4P53420 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC5.18□□□□□ -1.58
COL4A4P53420 EEF1A1P1-201ENST00000447052 739 ntBASIC5.18□□□□□ -1.58
COL4A4P53420 snoU13.22-201ENST00000459428 104 ntBASIC5.18□□□□□ -1.58
COL4A4P53420 FPGT-203ENST00000467578 601 ntTSL 2 BASIC5.18□□□□□ -1.58
COL4A4P53420 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC5.18□□□□□ -1.58
COL4A4P53420 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC5.18□□□□□ -1.58
COL4A4P53420 AC007016.1-201ENST00000512110 244 ntBASIC5.18□□□□□ -1.58
COL4A4P53420 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC5.18□□□□□ -1.58
COL4A4P53420 IGKV3OR22-2-201ENST00000517943 313 ntBASIC5.18□□□□□ -1.58
COL4A4P53420 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC5.18□□□□□ -1.58
COL4A4P53420 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC5.18□□□□□ -1.58
COL4A4P53420 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.18□□□□□ -1.58
COL4A4P53420 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC5.18□□□□□ -1.58
COL4A4P53420 AC068831.4-201ENST00000556118 109 ntBASIC5.18□□□□□ -1.58
COL4A4P53420 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC5.18□□□□□ -1.58
COL4A4P53420 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC5.18□□□□□ -1.58
COL4A4P53420 RN7SL802P-201ENST00000577858 299 ntBASIC5.18□□□□□ -1.58
COL4A4P53420 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC5.18□□□□□ -1.58
COL4A4P53420 FAM27B-201ENST00000610601 213 ntBASIC5.18□□□□□ -1.58
COL4A4P53420 AC002044.3-201ENST00000623314 541 ntBASIC5.18□□□□□ -1.58
COL4A4P53420 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL4A4P53420 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL4A4P53420 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL4A4P53420 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC5.17□□□□□ -1.58
COL4A4P53420 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.17□□□□□ -1.58
COL4A4P53420 CCAT2-201ENST00000630920 1752 ntBASIC5.17□□□□□ -1.58
COL4A4P53420 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
COL4A4P53420 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.17□□□□□ -1.58
COL4A4P53420 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL4A4P53420 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL4A4P53420 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL4A4P53420 RNU1-82P-201ENST00000390851 165 ntBASIC5.17□□□□□ -1.58
COL4A4P53420 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL4A4P53420 VN1R37P-201ENST00000419096 748 ntBASIC5.17□□□□□ -1.58
COL4A4P53420 RPL12P28-201ENST00000430852 489 ntBASIC5.17□□□□□ -1.58
COL4A4P53420 AC073052.1-201ENST00000440417 714 ntBASIC5.17□□□□□ -1.58
COL4A4P53420 MRPL35P2-201ENST00000448009 511 ntBASIC5.17□□□□□ -1.58
COL4A4P53420 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC5.17□□□□□ -1.58
COL4A4P53420 AC079168.2-201ENST00000453977 416 ntBASIC5.17□□□□□ -1.58
COL4A4P53420 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC5.17□□□□□ -1.58
COL4A4P53420 CR383656.1-201ENST00000484916 377 ntBASIC5.17□□□□□ -1.58
COL4A4P53420 AC015795.1-201ENST00000513669 327 ntBASIC5.17□□□□□ -1.58
COL4A4P53420 RPL23AP53-201ENST00000521854 457 ntBASIC5.17□□□□□ -1.58
COL4A4P53420 AC016229.2-201ENST00000591331 417 ntTSL 2 BASIC5.17□□□□□ -1.58
COL4A4P53420 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC5.17□□□□□ -1.58
COL4A4P53420 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.17□□□□□ -1.58
COL4A4P53420 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL4A4P53420 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
COL4A4P53420 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL4A4P53420 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
COL4A4P53420 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL4A4P53420 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC5.17□□□□□ -1.58
COL4A4P53420 AC022417.1-201ENST00000624768 1303 ntBASIC5.16□□□□□ -1.58
COL4A4P53420 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL4A4P53420 AL731532.1-201ENST00000623972 4236 ntBASIC5.16□□□□□ -1.58
COL4A4P53420 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
COL4A4P53420 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.16□□□□□ -1.58
COL4A4P53420 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL4A4P53420 AC097063.1-201ENST00000426714 1797 ntBASIC5.16□□□□□ -1.58
COL4A4P53420 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.16□□□□□ -1.58
COL4A4P53420 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.16□□□□□ -1.58
COL4A4P53420 RNA5SP187-201ENST00000384400 119 ntBASIC5.16□□□□□ -1.58
COL4A4P53420 AC006065.1-201ENST00000422539 802 ntBASIC5.16□□□□□ -1.58
COL4A4P53420 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC5.16□□□□□ -1.58
COL4A4P53420 CYCSP24-201ENST00000445119 316 ntBASIC5.16□□□□□ -1.58
COL4A4P53420 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC5.16□□□□□ -1.58
COL4A4P53420 RPS5P7-201ENST00000456664 608 ntBASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 114.7 ms