Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC010132.4-201ENST00000569883 1368 ntBASIC6.77□□□□□ -1.33
LIG3P49916 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
LIG3P49916 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
LIG3P49916 AC095050.2-201ENST00000510748 1458 ntBASIC6.77□□□□□ -1.33
LIG3P49916 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
LIG3P49916 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC6.77□□□□□ -1.33
LIG3P49916 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
LIG3P49916 AC020658.2-201ENST00000559030 4020 ntBASIC6.77□□□□□ -1.33
LIG3P49916 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
LIG3P49916 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC6.77□□□□□ -1.33
LIG3P49916 DCAF13P3-201ENST00000561147 1334 ntBASIC6.76□□□□□ -1.33
LIG3P49916 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
LIG3P49916 FANCD2P2-201ENST00000437591 1400 ntBASIC6.76□□□□□ -1.33
LIG3P49916 AC110373.1-201ENST00000505994 3505 ntBASIC6.76□□□□□ -1.33
LIG3P49916 ATP8A2P3-201ENST00000426792 1536 ntBASIC6.76□□□□□ -1.33
LIG3P49916 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC6.76□□□□□ -1.33
LIG3P49916 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
LIG3P49916 AC079753.1-201ENST00000623243 3868 ntBASIC6.76□□□□□ -1.33
LIG3P49916 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC6.76□□□□□ -1.33
LIG3P49916 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
LIG3P49916 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
LIG3P49916 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
LIG3P49916 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
LIG3P49916 OR5B2-201ENST00000302581 1049 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
LIG3P49916 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
LIG3P49916 TAS2R42-201ENST00000334266 945 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
LIG3P49916 RNA5SP308-201ENST00000362532 115 ntBASIC6.76□□□□□ -1.33
LIG3P49916 SNORD8-201ENST00000363915 110 ntBASIC6.76□□□□□ -1.33
LIG3P49916 RNU1-59P-201ENST00000364829 162 ntBASIC6.76□□□□□ -1.33
LIG3P49916 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
LIG3P49916 MIR16-1-201ENST00000385271 89 ntBASIC6.76□□□□□ -1.33
LIG3P49916 AL590635.1-201ENST00000406314 586 ntBASIC6.76□□□□□ -1.33
LIG3P49916 RAP1BP3-201ENST00000407180 549 ntBASIC6.76□□□□□ -1.33
LIG3P49916 RPS26P38-201ENST00000414476 348 ntBASIC6.76□□□□□ -1.33
LIG3P49916 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC6.76□□□□□ -1.33
LIG3P49916 CYCSP46-201ENST00000423569 204 ntBASIC6.76□□□□□ -1.33
LIG3P49916 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC6.76□□□□□ -1.33
LIG3P49916 GCA-203ENST00000429691 824 ntTSL 3 BASIC6.76□□□□□ -1.33
LIG3P49916 FBXW12-203ENST00000436231 1117 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
LIG3P49916 ATP6V1G1P4-201ENST00000438388 335 ntBASIC6.76□□□□□ -1.33
LIG3P49916 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
LIG3P49916 NFIA-AS2-203ENST00000438559 1275 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
LIG3P49916 AC064862.5-201ENST00000440618 334 ntBASIC6.76□□□□□ -1.33
LIG3P49916 TRIM60P18-201ENST00000441518 828 ntBASIC6.76□□□□□ -1.33
LIG3P49916 BX248409.1-201ENST00000455497 255 ntBASIC6.76□□□□□ -1.33
LIG3P49916 RN7SL83P-201ENST00000468131 297 ntBASIC6.76□□□□□ -1.33
LIG3P49916 TRBV8-2-201ENST00000475637 270 ntBASIC6.76□□□□□ -1.33
LIG3P49916 SNRPCP11-201ENST00000492453 205 ntBASIC6.76□□□□□ -1.33
LIG3P49916 BNIP3P41-201ENST00000503774 571 ntBASIC6.76□□□□□ -1.33
LIG3P49916 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC6.76□□□□□ -1.33
LIG3P49916 AC091849.1-201ENST00000509920 121 ntBASIC6.76□□□□□ -1.33
LIG3P49916 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC6.76□□□□□ -1.33
LIG3P49916 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC6.76□□□□□ -1.33
LIG3P49916 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC6.76□□□□□ -1.33
LIG3P49916 CDC42P3-201ENST00000518493 633 ntBASIC6.76□□□□□ -1.33
LIG3P49916 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC6.76□□□□□ -1.33
LIG3P49916 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
LIG3P49916 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC6.76□□□□□ -1.33
LIG3P49916 AP001207.1-201ENST00000524051 481 ntBASIC6.76□□□□□ -1.33
LIG3P49916 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC6.76□□□□□ -1.33
LIG3P49916 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC6.76□□□□□ -1.33
LIG3P49916 AL671883.2-201ENST00000539514 536 ntTSL 4 BASIC6.76□□□□□ -1.33
LIG3P49916 AC008083.2-201ENST00000546707 476 ntBASIC6.76□□□□□ -1.33
LIG3P49916 CCNG2P1-201ENST00000549521 1000 ntBASIC6.76□□□□□ -1.33
LIG3P49916 AC087883.1-201ENST00000551882 391 ntBASIC6.76□□□□□ -1.33
LIG3P49916 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC6.76□□□□□ -1.33
LIG3P49916 POLR2KP1-201ENST00000553226 168 ntBASIC6.76□□□□□ -1.33
LIG3P49916 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC6.76□□□□□ -1.33
LIG3P49916 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC6.76□□□□□ -1.33
LIG3P49916 AC087286.3-201ENST00000561409 953 ntTSL 3 BASIC6.76□□□□□ -1.33
LIG3P49916 AC007494.1-201ENST00000562293 760 ntBASIC6.76□□□□□ -1.33
LIG3P49916 MDFIC2-201ENST00000567252 778 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
LIG3P49916 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC6.76□□□□□ -1.33
LIG3P49916 RPL7AP69-201ENST00000595306 806 ntBASIC6.76□□□□□ -1.33
LIG3P49916 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC6.76□□□□□ -1.33
LIG3P49916 AL353593.3-201ENST00000602778 764 ntTSL 2 BASIC6.76□□□□□ -1.33
LIG3P49916 AC083899.3-201ENST00000603413 594 ntBASIC6.76□□□□□ -1.33
LIG3P49916 AC133552.5-201ENST00000604266 540 ntBASIC6.76□□□□□ -1.33
LIG3P49916 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC6.76□□□□□ -1.33
LIG3P49916 NDUFA8P1-201ENST00000605525 367 ntBASIC6.76□□□□□ -1.33
LIG3P49916 AL357078.3-201ENST00000607528 618 ntBASIC6.76□□□□□ -1.33
LIG3P49916 AC012360.2-201ENST00000609349 391 ntBASIC6.76□□□□□ -1.33
LIG3P49916 U1.25-201ENST00000614085 162 ntBASIC6.76□□□□□ -1.33
LIG3P49916 AC005840.5-201ENST00000619166 599 ntBASIC6.76□□□□□ -1.33
LIG3P49916 U1.31-201ENST00000620022 160 ntBASIC6.76□□□□□ -1.33
LIG3P49916 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC6.76□□□□□ -1.33
LIG3P49916 EEF1A1P24-201ENST00000451469 1378 ntBASIC6.76□□□□□ -1.33
LIG3P49916 SCAMP1-206ENST00000618166 1358 ntTSL 2 BASIC6.76□□□□□ -1.33
LIG3P49916 AC007485.2-201ENST00000623493 1667 ntBASIC6.76□□□□□ -1.33
LIG3P49916 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
LIG3P49916 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
LIG3P49916 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
LIG3P49916 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
LIG3P49916 AC092447.7-201ENST00000422212 1621 ntBASIC6.76□□□□□ -1.33
LIG3P49916 AC005261.2-201ENST00000593427 4258 ntBASIC6.76□□□□□ -1.33
LIG3P49916 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
LIG3P49916 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
LIG3P49916 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC6.75□□□□□ -1.33
LIG3P49916 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC6.75□□□□□ -1.33
LIG3P49916 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC6.75□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms