Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.49
MSX2P35548 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.71□□□□□ -1.49
MSX2P35548 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.49
MSX2P35548 DCSTAMP-208ENST00000622554 1471 ntTSL 5 BASIC5.71□□□□□ -1.49
MSX2P35548 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
MSX2P35548 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.71□□□□□ -1.49
MSX2P35548 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.71□□□□□ -1.49
MSX2P35548 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
MSX2P35548 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.71□□□□□ -1.5
MSX2P35548 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
MSX2P35548 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
MSX2P35548 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
MSX2P35548 LALBA-201ENST00000301046 728 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
MSX2P35548 RN7SKP128-201ENST00000364270 303 ntBASIC5.71□□□□□ -1.5
MSX2P35548 Y_RNA.553-201ENST00000384670 102 ntBASIC5.71□□□□□ -1.5
MSX2P35548 SNORD65C-201ENST00000390962 71 ntBASIC5.71□□□□□ -1.5
MSX2P35548 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
MSX2P35548 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
MSX2P35548 RNU4-74P-201ENST00000411280 161 ntBASIC5.71□□□□□ -1.5
MSX2P35548 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC5.71□□□□□ -1.5
MSX2P35548 METTL15P3-201ENST00000415522 1221 ntBASIC5.71□□□□□ -1.5
MSX2P35548 MTND1P23-201ENST00000416931 372 ntBASIC5.71□□□□□ -1.5
MSX2P35548 AC006960.1-201ENST00000419980 153 ntBASIC5.71□□□□□ -1.5
MSX2P35548 AL589794.1-201ENST00000424971 390 ntBASIC5.71□□□□□ -1.5
MSX2P35548 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.71□□□□□ -1.5
MSX2P35548 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.71□□□□□ -1.5
MSX2P35548 AC099670.2-201ENST00000435130 321 ntBASIC5.71□□□□□ -1.5
MSX2P35548 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC5.71□□□□□ -1.5
MSX2P35548 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.71□□□□□ -1.5
MSX2P35548 AC106874.1-201ENST00000440495 646 ntTSL 3 BASIC5.71□□□□□ -1.5
MSX2P35548 RPSAP40-201ENST00000442343 891 ntBASIC5.71□□□□□ -1.5
MSX2P35548 AL353572.1-201ENST00000442490 417 ntBASIC5.71□□□□□ -1.5
MSX2P35548 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC5.71□□□□□ -1.5
MSX2P35548 MTCYBP3-201ENST00000445588 1137 ntBASIC5.71□□□□□ -1.5
MSX2P35548 AL606662.1-201ENST00000445763 553 ntBASIC5.71□□□□□ -1.5
MSX2P35548 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC5.71□□□□□ -1.5
MSX2P35548 AL161722.1-201ENST00000446972 1032 ntBASIC5.71□□□□□ -1.5
MSX2P35548 AC007327.1-201ENST00000447461 264 ntBASIC5.71□□□□□ -1.5
MSX2P35548 AL050341.1-201ENST00000447743 313 ntBASIC5.71□□□□□ -1.5
MSX2P35548 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC5.71□□□□□ -1.5
MSX2P35548 AC022080.2-201ENST00000452932 533 ntBASIC5.71□□□□□ -1.5
MSX2P35548 MTCYBP1-201ENST00000454315 1119 ntBASIC5.71□□□□□ -1.5
MSX2P35548 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC5.71□□□□□ -1.5
MSX2P35548 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC5.71□□□□□ -1.5
MSX2P35548 AC084754.1-201ENST00000463466 464 ntBASIC5.71□□□□□ -1.5
MSX2P35548 RN7SL326P-201ENST00000477493 296 ntBASIC5.71□□□□□ -1.5
MSX2P35548 RPL7P40-201ENST00000481703 745 ntBASIC5.71□□□□□ -1.5
MSX2P35548 OR7E157P-201ENST00000494376 911 ntBASIC5.71□□□□□ -1.5
MSX2P35548 AC138035.1-201ENST00000499986 992 ntTSL 5 BASIC5.71□□□□□ -1.5
MSX2P35548 AC008868.1-201ENST00000509786 737 ntBASIC5.71□□□□□ -1.5
MSX2P35548 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC5.71□□□□□ -1.5
MSX2P35548 AC097486.1-201ENST00000515331 210 ntBASIC5.71□□□□□ -1.5
MSX2P35548 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
MSX2P35548 AKIRIN1P1-201ENST00000547384 544 ntBASIC5.71□□□□□ -1.5
MSX2P35548 AL121766.1-201ENST00000547436 487 ntBASIC5.71□□□□□ -1.5
MSX2P35548 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC5.71□□□□□ -1.5
MSX2P35548 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC5.71□□□□□ -1.5
MSX2P35548 RPL3P13-201ENST00000550415 216 ntBASIC5.71□□□□□ -1.5
MSX2P35548 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC5.71□□□□□ -1.5
MSX2P35548 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
MSX2P35548 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC5.71□□□□□ -1.5
MSX2P35548 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC5.71□□□□□ -1.5
MSX2P35548 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC5.71□□□□□ -1.5
MSX2P35548 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC5.71□□□□□ -1.5
MSX2P35548 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC5.71□□□□□ -1.5
MSX2P35548 EIF1P4-201ENST00000572664 335 ntBASIC5.71□□□□□ -1.5
MSX2P35548 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC5.71□□□□□ -1.5
MSX2P35548 AC012254.2-203ENST00000588705 561 ntAPPRIS P5 TSL 2 BASIC5.71□□□□□ -1.5
MSX2P35548 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
MSX2P35548 TEX41-218ENST00000596540 882 ntTSL 5 BASIC5.71□□□□□ -1.5
MSX2P35548 VN1R82P-201ENST00000601481 356 ntBASIC5.71□□□□□ -1.5
MSX2P35548 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC5.71□□□□□ -1.5
MSX2P35548 AL392112.1-201ENST00000605115 829 ntBASIC5.71□□□□□ -1.5
MSX2P35548 AC004223.4-201ENST00000612426 332 ntBASIC5.71□□□□□ -1.5
MSX2P35548 AC087241.4-201ENST00000612441 480 ntBASIC5.71□□□□□ -1.5
MSX2P35548 RNA5SP439-201ENST00000617595 124 ntBASIC5.71□□□□□ -1.5
MSX2P35548 MIR6813-201ENST00000621638 56 ntBASIC5.71□□□□□ -1.5
MSX2P35548 PDCD6IPP1-202ENST00000622242 1064 ntBASIC5.71□□□□□ -1.5
MSX2P35548 SPTY2D1-AS1-206ENST00000636011 853 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
MSX2P35548 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC5.71□□□□□ -1.5
MSX2P35548 AL121839.2-201ENST00000565058 6943 ntBASIC5.71□□□□□ -1.5
MSX2P35548 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.71□□□□□ -1.5
MSX2P35548 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.71□□□□□ -1.5
MSX2P35548 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
MSX2P35548 FANCD2P2-201ENST00000437591 1400 ntBASIC5.71□□□□□ -1.5
MSX2P35548 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
MSX2P35548 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC5.71□□□□□ -1.5
MSX2P35548 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.71□□□□□ -1.5
MSX2P35548 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
MSX2P35548 AL591135.1-201ENST00000401578 5914 ntBASIC5.71□□□□□ -1.5
MSX2P35548 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC5.71□□□□□ -1.5
MSX2P35548 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.71□□□□□ -1.5
MSX2P35548 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.71□□□□□ -1.5
MSX2P35548 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSX2P35548 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSX2P35548 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.7□□□□□ -1.5
MSX2P35548 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
MSX2P35548 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSX2P35548 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
MSX2P35548 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms