Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC092142.1-202ENST00000567021 829 ntTSL 5 BASIC6.45□□□□□ -1.38
COL8A1P27658 RBM22P12-201ENST00000567098 1255 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 AL031722.1-201ENST00000570247 220 ntTSL 5 BASIC6.45□□□□□ -1.38
COL8A1P27658 MIR3157-201ENST00000578688 85 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL8A1P27658 AC068790.5-201ENST00000602741 355 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 AC092032.1-201ENST00000603090 165 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 uc_338.29-201ENST00000615099 168 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 AC078909.2-201ENST00000620584 398 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 NAA50-211ENST00000630058 177 ntTSL 5 BASIC6.45□□□□□ -1.38
COL8A1P27658 CRNDE-214ENST00000637011 865 ntTSL 5 BASIC6.45□□□□□ -1.38
COL8A1P27658 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC6.45□□□□□ -1.38
COL8A1P27658 MACROD2-202ENST00000378058 4025 ntTSL 2 BASIC6.45□□□□□ -1.38
COL8A1P27658 AC015849.5-201ENST00000604907 5473 ntTSL 2 BASIC6.45□□□□□ -1.38
COL8A1P27658 CPB2-AS1-204ENST00000606991 3218 ntTSL 2 BASIC6.45□□□□□ -1.38
COL8A1P27658 MAPK10-354ENST00000641823 2732 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL8A1P27658 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL8A1P27658 FAF2-201ENST00000261942 4515 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL8A1P27658 FGFR2-213ENST00000369061 3803 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL8A1P27658 AC004947.1-201ENST00000420912 2781 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL8A1P27658 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL8A1P27658 GPR89A-203ENST00000462900 1527 ntTSL 2 BASIC6.45□□□□□ -1.38
COL8A1P27658 CASC19-243ENST00000641588 1546 ntBASIC6.45□□□□□ -1.38
COL8A1P27658 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL8A1P27658 CHN2-208ENST00000412711 2991 ntTSL 2 BASIC6.45□□□□□ -1.38
COL8A1P27658 ZMYND8-216ENST00000471951 4053 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL8A1P27658 PIGN-231ENST00000639174 4095 ntTSL 5 BASIC6.45□□□□□ -1.38
COL8A1P27658 MRPL22-206ENST00000522038 3162 ntAPPRIS ALT1 TSL 5 BASIC6.45□□□□□ -1.38
COL8A1P27658 TMEM108-201ENST00000321871 3744 ntAPPRIS P3 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL8A1P27658 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL8A1P27658 AKAP13-203ENST00000394518 13215 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL8A1P27658 MAK-205ENST00000538030 2459 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL8A1P27658 B3GALT1-201ENST00000392690 5094 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
COL8A1P27658 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC6.44□□□□□ -1.38
COL8A1P27658 FCGR1B-210ENST00000623603 1581 ntAPPRIS P2 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL8A1P27658 DNMBP-203ENST00000543621 4178 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL8A1P27658 CCDC66-203ENST00000394672 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL8A1P27658 AC004988.1-201ENST00000415237 1771 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL8A1P27658 TDGF1P3-202ENST00000602699 2710 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 SORBS1-212ENST00000371249 5927 ntAPPRIS P3 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL8A1P27658 CREM-208ENST00000361599 2170 ntTSL 5 BASIC6.44□□□□□ -1.38
COL8A1P27658 OFD1P10Y-201ENST00000434110 1433 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC6.44□□□□□ -1.38
COL8A1P27658 POTEH-AS1-201ENST00000422014 2566 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL8A1P27658 EYA3-208ENST00000540618 5885 ntTSL 2 BASIC6.44□□□□□ -1.38
COL8A1P27658 NUMB-214ENST00000555238 3588 ntAPPRIS ALT1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL8A1P27658 YME1L1-201ENST00000326799 3994 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL8A1P27658 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL8A1P27658 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL8A1P27658 ODF3-202ENST00000342593 386 ntTSL 5 BASIC6.44□□□□□ -1.38
COL8A1P27658 RNA5SP238-201ENST00000365464 120 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 SNORA69-201ENST00000383895 132 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 Y_RNA.489-201ENST00000384410 101 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 Y_RNA.556-201ENST00000384677 113 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
COL8A1P27658 MIR548I2-201ENST00000408348 149 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 Y_RNA.608-201ENST00000410647 95 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 GSTA10P-201ENST00000412182 576 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC6.44□□□□□ -1.38
COL8A1P27658 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC6.44□□□□□ -1.38
COL8A1P27658 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC6.44□□□□□ -1.38
COL8A1P27658 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC6.44□□□□□ -1.38
COL8A1P27658 PTPN2P1-201ENST00000423212 1072 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 PLA2G12AP2-201ENST00000424744 264 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 AC245291.3-201ENST00000443400 292 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 H2AFZP6-201ENST00000444403 394 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC6.44□□□□□ -1.38
COL8A1P27658 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC6.44□□□□□ -1.38
COL8A1P27658 AC107398.1-201ENST00000486904 505 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 AC104825.1-201ENST00000503186 685 ntTSL 3 BASIC6.44□□□□□ -1.38
COL8A1P27658 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC6.44□□□□□ -1.38
COL8A1P27658 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC6.44□□□□□ -1.38
COL8A1P27658 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC6.44□□□□□ -1.38
COL8A1P27658 AC093816.1-201ENST00000515076 913 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 RNU4-49P-201ENST00000516080 140 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 RNU6-445P-201ENST00000516949 107 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 AC105031.1-201ENST00000518550 476 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC6.44□□□□□ -1.38
COL8A1P27658 AP000790.1-201ENST00000528891 737 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 AL109766.1-201ENST00000555080 552 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC6.44□□□□□ -1.38
COL8A1P27658 MIR3154-201ENST00000577829 84 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC6.44□□□□□ -1.38
COL8A1P27658 KCNMA1-AS1-204ENST00000595702 504 ntTSL 5 BASIC6.44□□□□□ -1.38
COL8A1P27658 AL953862.2-201ENST00000603089 820 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 AC104785.1-201ENST00000603220 588 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC6.44□□□□□ -1.38
COL8A1P27658 RN7SL261P-201ENST00000613441 282 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 AL157817.1-201ENST00000614264 790 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 AC243571.1-201ENST00000615743 478 ntTSL 3 BASIC6.44□□□□□ -1.38
COL8A1P27658 RN7SL680P-201ENST00000620379 299 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 MIR6503-201ENST00000622884 86 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 AC073592.6-201ENST00000624271 415 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC6.44□□□□□ -1.38
COL8A1P27658 AC005841.2-201ENST00000637658 1167 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
COL8A1P27658 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC6.44□□□□□ -1.38
COL8A1P27658 ZNF415-213ENST00000597503 2469 ntTSL 2 BASIC6.44□□□□□ -1.38
COL8A1P27658 MAPK10-204ENST00000395157 2665 ntTSL 5 BASIC6.44□□□□□ -1.38
COL8A1P27658 AL627309.5-201ENST00000484859 4860 ntTSL 5 BASIC6.44□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms