Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL5A3P25940 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC5.94□□□□□ -1.46
COL5A3P25940 SNX18P1Y-201ENST00000616231 511 ntBASIC5.94□□□□□ -1.46
COL5A3P25940 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
COL5A3P25940 MIR492-201ENST00000638676 116 ntBASIC5.94□□□□□ -1.46
COL5A3P25940 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL5A3P25940 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL5A3P25940 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
COL5A3P25940 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC5.94□□□□□ -1.46
COL5A3P25940 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.94□□□□□ -1.46
COL5A3P25940 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
COL5A3P25940 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL5A3P25940 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL5A3P25940 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL5A3P25940 PCAT14-202ENST00000627127 3935 ntBASIC5.94□□□□□ -1.46
COL5A3P25940 AC008033.1-201ENST00000216407 1162 ntBASIC5.94□□□□□ -1.46
COL5A3P25940 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
COL5A3P25940 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL5A3P25940 TMSB10P2-201ENST00000416049 131 ntBASIC5.94□□□□□ -1.46
COL5A3P25940 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC5.94□□□□□ -1.46
COL5A3P25940 AL158073.1-201ENST00000426848 1104 ntBASIC5.94□□□□□ -1.46
COL5A3P25940 FTH1P16-201ENST00000435241 552 ntBASIC5.94□□□□□ -1.46
COL5A3P25940 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC5.94□□□□□ -1.46
COL5A3P25940 SCARNA10-201ENST00000459255 330 ntBASIC5.94□□□□□ -1.46
COL5A3P25940 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC5.94□□□□□ -1.46
COL5A3P25940 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC5.94□□□□□ -1.46
COL5A3P25940 AC007224.1-201ENST00000564410 144 ntBASIC5.94□□□□□ -1.46
COL5A3P25940 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL5A3P25940 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC5.94□□□□□ -1.46
COL5A3P25940 AC011815.3-201ENST00000624194 473 ntBASIC5.94□□□□□ -1.46
COL5A3P25940 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC5.94□□□□□ -1.46
COL5A3P25940 AC006453.5-201ENST00000636451 619 ntBASIC5.94□□□□□ -1.46
COL5A3P25940 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC5.93□□□□□ -1.46
COL5A3P25940 UGT2B26P-201ENST00000508672 1613 ntBASIC5.93□□□□□ -1.46
COL5A3P25940 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL5A3P25940 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL5A3P25940 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL5A3P25940 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL5A3P25940 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL5A3P25940 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL5A3P25940 AC021146.4-201ENST00000309229 279 ntBASIC5.93□□□□□ -1.46
COL5A3P25940 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL5A3P25940 RNA5SP317-201ENST00000410176 116 ntBASIC5.93□□□□□ -1.46
COL5A3P25940 RNA5SP311-201ENST00000411290 116 ntBASIC5.93□□□□□ -1.46
COL5A3P25940 AP001610.2-201ENST00000415820 422 ntTSL 3 BASIC5.93□□□□□ -1.46
COL5A3P25940 AL451139.1-201ENST00000434718 346 ntBASIC5.93□□□□□ -1.46
COL5A3P25940 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC5.93□□□□□ -1.46
COL5A3P25940 RNA5SP315-201ENST00000516340 116 ntBASIC5.93□□□□□ -1.46
COL5A3P25940 RNA5SP312-201ENST00000517068 116 ntBASIC5.93□□□□□ -1.46
COL5A3P25940 CARD16-203ENST00000525374 503 ntTSL 3 BASIC5.93□□□□□ -1.46
COL5A3P25940 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC5.93□□□□□ -1.46
COL5A3P25940 AC016229.2-201ENST00000591331 417 ntTSL 2 BASIC5.93□□□□□ -1.46
COL5A3P25940 AP001160.4-201ENST00000596971 382 ntBASIC5.93□□□□□ -1.46
COL5A3P25940 AL445567.2-201ENST00000618935 498 ntBASIC5.93□□□□□ -1.46
COL5A3P25940 AL035461.2-201ENST00000619201 524 ntBASIC5.93□□□□□ -1.46
COL5A3P25940 AC021422.1-201ENST00000621212 473 ntBASIC5.93□□□□□ -1.46
COL5A3P25940 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC5.93□□□□□ -1.46
COL5A3P25940 ST8SIA5-203ENST00000538168 13761 ntTSL 2 BASIC5.93□□□□□ -1.46
COL5A3P25940 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL5A3P25940 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
COL5A3P25940 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A3P25940 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC5.92□□□□□ -1.46
COL5A3P25940 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A3P25940 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC5.92□□□□□ -1.46
COL5A3P25940 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC5.92□□□□□ -1.46
COL5A3P25940 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A3P25940 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A3P25940 AC100871.1-201ENST00000507871 1456 ntBASIC5.92□□□□□ -1.46
COL5A3P25940 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A3P25940 AP1G1-201ENST00000299980 6969 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A3P25940 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A3P25940 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC5.92□□□□□ -1.46
COL5A3P25940 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A3P25940 RNA5SP453-201ENST00000362503 119 ntBASIC5.92□□□□□ -1.46
COL5A3P25940 SNORA37-201ENST00000384504 129 ntBASIC5.92□□□□□ -1.46
COL5A3P25940 AP000580.1-201ENST00000404439 358 ntBASIC5.92□□□□□ -1.46
COL5A3P25940 AC011933.1-201ENST00000413334 321 ntBASIC5.92□□□□□ -1.46
COL5A3P25940 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC5.92□□□□□ -1.46
COL5A3P25940 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
COL5A3P25940 AC116533.1-201ENST00000459748 321 ntBASIC5.92□□□□□ -1.46
COL5A3P25940 RN7SL98P-201ENST00000462271 300 ntBASIC5.92□□□□□ -1.46
COL5A3P25940 AC108475.1-201ENST00000507880 950 ntBASIC5.92□□□□□ -1.46
COL5A3P25940 AC106806.2-201ENST00000509365 500 ntBASIC5.92□□□□□ -1.46
COL5A3P25940 IGKV3OR22-2-201ENST00000517943 313 ntBASIC5.92□□□□□ -1.46
COL5A3P25940 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC5.92□□□□□ -1.46
COL5A3P25940 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC5.92□□□□□ -1.46
COL5A3P25940 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A3P25940 ASXL2-201ENST00000336112 8889 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A3P25940 RAB27B-201ENST00000262094 7281 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A3P25940 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC5.92□□□□□ -1.46
COL5A3P25940 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.91□□□□□ -1.46
COL5A3P25940 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC5.91□□□□□ -1.46
COL5A3P25940 RPS27AP6-201ENST00000427962 448 ntBASIC5.91□□□□□ -1.46
COL5A3P25940 Y_RNA.719-201ENST00000517156 106 ntBASIC5.91□□□□□ -1.46
COL5A3P25940 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC5.91□□□□□ -1.46
COL5A3P25940 AC090181.2-201ENST00000602975 672 ntBASIC5.91□□□□□ -1.46
COL5A3P25940 AL133243.1-201ENST00000614487 366 ntBASIC5.91□□□□□ -1.46
COL5A3P25940 ICE2P1-201ENST00000512800 1849 ntBASIC5.91□□□□□ -1.46
COL5A3P25940 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL5A3P25940 ZNF81-204ENST00000376954 7933 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms