Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC009237.5-201ENST00000414271 501 ntBASIC4.72□□□□□ -1.65
COL5A1P20908 AL451062.2-201ENST00000427515 271 ntBASIC4.72□□□□□ -1.65
COL5A1P20908 ZFRP1-201ENST00000457579 2970 ntBASIC4.72□□□□□ -1.65
COL5A1P20908 AC010326.1-201ENST00000462726 602 ntBASIC4.72□□□□□ -1.65
COL5A1P20908 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL5A1P20908 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.72□□□□□ -1.65
COL5A1P20908 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC4.72□□□□□ -1.65
COL5A1P20908 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.72□□□□□ -1.65
COL5A1P20908 MIR4429-201ENST00000580105 73 ntBASIC4.72□□□□□ -1.65
COL5A1P20908 AC008782.1-201ENST00000603386 430 ntBASIC4.72□□□□□ -1.65
COL5A1P20908 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC4.72□□□□□ -1.65
COL5A1P20908 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC4.72□□□□□ -1.65
COL5A1P20908 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL5A1P20908 AC008785.1-201ENST00000624475 456 ntBASIC4.72□□□□□ -1.65
COL5A1P20908 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.72□□□□□ -1.65
COL5A1P20908 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.65
COL5A1P20908 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.71□□□□□ -1.65
COL5A1P20908 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.65
COL5A1P20908 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL5A1P20908 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL5A1P20908 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL5A1P20908 ADAM5-202ENST00000399789 1942 ntBASIC4.71□□□□□ -1.66
COL5A1P20908 OFD1P9Y-201ENST00000417699 1491 ntBASIC4.71□□□□□ -1.66
COL5A1P20908 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL5A1P20908 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC4.71□□□□□ -1.66
COL5A1P20908 TRIM51GP-201ENST00000534741 1350 ntBASIC4.71□□□□□ -1.66
COL5A1P20908 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL5A1P20908 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
COL5A1P20908 SNORA73.1-201ENST00000363107 205 ntBASIC4.71□□□□□ -1.66
COL5A1P20908 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL5A1P20908 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
COL5A1P20908 RPL12P9-201ENST00000412942 488 ntBASIC4.71□□□□□ -1.66
COL5A1P20908 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
COL5A1P20908 CENPIP1-201ENST00000425713 902 ntBASIC4.71□□□□□ -1.66
COL5A1P20908 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC4.71□□□□□ -1.66
COL5A1P20908 CYCSP24-201ENST00000445119 316 ntBASIC4.71□□□□□ -1.66
COL5A1P20908 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC4.71□□□□□ -1.66
COL5A1P20908 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
COL5A1P20908 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC4.71□□□□□ -1.66
COL5A1P20908 CEACAMP6-201ENST00000452007 574 ntBASIC4.71□□□□□ -1.66
COL5A1P20908 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.71□□□□□ -1.66
COL5A1P20908 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.71□□□□□ -1.66
COL5A1P20908 AC109327.1-201ENST00000471666 403 ntBASIC4.71□□□□□ -1.66
COL5A1P20908 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL5A1P20908 AL049839.1-201ENST00000556151 657 ntBASIC4.71□□□□□ -1.66
COL5A1P20908 MIR5699-201ENST00000578903 90 ntBASIC4.71□□□□□ -1.66
COL5A1P20908 AP005119.2-201ENST00000579735 1105 ntBASIC4.71□□□□□ -1.66
COL5A1P20908 AC069366.1-201ENST00000583159 838 ntBASIC4.71□□□□□ -1.66
COL5A1P20908 MIR4715-201ENST00000584117 79 ntBASIC4.71□□□□□ -1.66
COL5A1P20908 Z95327.3-201ENST00000610385 572 ntBASIC4.71□□□□□ -1.66
COL5A1P20908 IPO5-229ENST00000631030 192 ntTSL 5 BASIC4.71□□□□□ -1.66
COL5A1P20908 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
COL5A1P20908 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
COL5A1P20908 AC093671.1-201ENST00000624981 2929 ntBASIC4.71□□□□□ -1.66
COL5A1P20908 AL442639.1-201ENST00000625030 1899 ntBASIC4.71□□□□□ -1.66
COL5A1P20908 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
COL5A1P20908 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC4.71□□□□□ -1.66
COL5A1P20908 RBPJP2-201ENST00000618187 1444 ntBASIC4.71□□□□□ -1.66
COL5A1P20908 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
COL5A1P20908 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC4.71□□□□□ -1.66
COL5A1P20908 SAMMSON-210ENST00000641260 1308 ntBASIC4.71□□□□□ -1.66
COL5A1P20908 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
COL5A1P20908 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL5A1P20908 DHX9P1-201ENST00000436565 3076 ntBASIC4.7□□□□□ -1.66
COL5A1P20908 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL5A1P20908 AL591135.1-201ENST00000401578 5914 ntBASIC4.7□□□□□ -1.66
COL5A1P20908 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL5A1P20908 AC009951.1-201ENST00000623674 2614 ntBASIC4.7□□□□□ -1.66
COL5A1P20908 AP000432.2-201ENST00000624164 2048 ntBASIC4.7□□□□□ -1.66
COL5A1P20908 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
COL5A1P20908 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.7□□□□□ -1.66
COL5A1P20908 MTCO1P15-201ENST00000529569 1526 ntBASIC4.7□□□□□ -1.66
COL5A1P20908 SNORA70.10-201ENST00000384515 134 ntBASIC4.7□□□□□ -1.66
COL5A1P20908 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC4.7□□□□□ -1.66
COL5A1P20908 ATG4AP1-201ENST00000416893 538 ntBASIC4.7□□□□□ -1.66
COL5A1P20908 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL5A1P20908 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL5A1P20908 MRPS21P3-201ENST00000436696 262 ntBASIC4.7□□□□□ -1.66
COL5A1P20908 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.7□□□□□ -1.66
COL5A1P20908 PPP1R11P1-201ENST00000486095 376 ntBASIC4.7□□□□□ -1.66
COL5A1P20908 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC4.7□□□□□ -1.66
COL5A1P20908 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.7□□□□□ -1.66
COL5A1P20908 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC4.7□□□□□ -1.66
COL5A1P20908 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL5A1P20908 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL5A1P20908 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL5A1P20908 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL5A1P20908 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC4.7□□□□□ -1.66
COL5A1P20908 AL122126.1-201ENST00000546905 1318 ntBASIC4.7□□□□□ -1.66
COL5A1P20908 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL5A1P20908 AP000756.2-201ENST00000624168 2567 ntBASIC4.7□□□□□ -1.66
COL5A1P20908 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL5A1P20908 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
COL5A1P20908 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
COL5A1P20908 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL5A1P20908 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC4.7□□□□□ -1.66
COL5A1P20908 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL5A1P20908 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
COL5A1P20908 AC068446.1-201ENST00000556425 1549 ntBASIC4.7□□□□□ -1.66
COL5A1P20908 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms