Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC125257.1-201ENST00000560400 2930 ntBASIC6.44□□□□□ -1.38
COL3A1P02461 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL3A1P02461 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL3A1P02461 AC100778.3-201ENST00000580060 1750 ntBASIC6.43□□□□□ -1.38
COL3A1P02461 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC6.43□□□□□ -1.38
COL3A1P02461 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
COL3A1P02461 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL3A1P02461 OR6C71P-201ENST00000432580 913 ntBASIC6.43□□□□□ -1.38
COL3A1P02461 AC097523.2-201ENST00000435551 652 ntBASIC6.43□□□□□ -1.38
COL3A1P02461 AC108463.1-201ENST00000450258 347 ntBASIC6.43□□□□□ -1.38
COL3A1P02461 AC234781.3-201ENST00000452540 973 ntBASIC6.43□□□□□ -1.38
COL3A1P02461 AC079168.2-201ENST00000453977 416 ntBASIC6.43□□□□□ -1.38
COL3A1P02461 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC6.43□□□□□ -1.38
COL3A1P02461 RPS29P22-201ENST00000472363 168 ntBASIC6.43□□□□□ -1.38
COL3A1P02461 RN7SL558P-201ENST00000497468 299 ntBASIC6.43□□□□□ -1.38
COL3A1P02461 AC093890.1-201ENST00000502554 540 ntBASIC6.43□□□□□ -1.38
COL3A1P02461 AC091868.1-201ENST00000508746 304 ntBASIC6.43□□□□□ -1.38
COL3A1P02461 RNU6-709P-201ENST00000517257 104 ntBASIC6.43□□□□□ -1.38
COL3A1P02461 AC105031.1-201ENST00000518550 476 ntBASIC6.43□□□□□ -1.38
COL3A1P02461 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
COL3A1P02461 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC6.43□□□□□ -1.38
COL3A1P02461 BNIP3P1-201ENST00000547295 580 ntBASIC6.43□□□□□ -1.38
COL3A1P02461 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC6.43□□□□□ -1.38
COL3A1P02461 AP000648.2-201ENST00000624182 404 ntBASIC6.43□□□□□ -1.38
COL3A1P02461 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL3A1P02461 AC002525.1-201ENST00000624392 1622 ntBASIC6.43□□□□□ -1.38
COL3A1P02461 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL3A1P02461 USP8-204ENST00000425032 3559 ntTSL 2 BASIC6.43□□□□□ -1.38
COL3A1P02461 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL3A1P02461 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC6.43□□□□□ -1.38
COL3A1P02461 AC133552.1-201ENST00000569988 4007 ntBASIC6.43□□□□□ -1.38
COL3A1P02461 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL3A1P02461 AC079741.1-201ENST00000321498 212 ntBASIC6.42□□□□□ -1.38
COL3A1P02461 MAST4-207ENST00000407621 559 ntTSL 2 BASIC6.42□□□□□ -1.38
COL3A1P02461 AC104333.2-201ENST00000422630 192 ntBASIC6.42□□□□□ -1.38
COL3A1P02461 AL606490.8-201ENST00000441624 319 ntBASIC6.42□□□□□ -1.38
COL3A1P02461 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC6.42□□□□□ -1.38
COL3A1P02461 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL3A1P02461 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC6.42□□□□□ -1.38
COL3A1P02461 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC6.42□□□□□ -1.38
COL3A1P02461 TPT1P8-201ENST00000510120 555 ntBASIC6.42□□□□□ -1.38
COL3A1P02461 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC6.42□□□□□ -1.38
COL3A1P02461 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC6.42□□□□□ -1.38
COL3A1P02461 MTND4LP25-201ENST00000570218 163 ntBASIC6.42□□□□□ -1.38
COL3A1P02461 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC6.42□□□□□ -1.38
COL3A1P02461 AC115989.2-201ENST00000578640 563 ntBASIC6.42□□□□□ -1.38
COL3A1P02461 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC6.42□□□□□ -1.38
COL3A1P02461 AL132640.2-201ENST00000559968 1698 ntBASIC6.42□□□□□ -1.38
COL3A1P02461 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC6.42□□□□□ -1.38
COL3A1P02461 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
COL3A1P02461 AL591135.1-201ENST00000401578 5914 ntBASIC6.42□□□□□ -1.38
COL3A1P02461 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL3A1P02461 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL3A1P02461 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL3A1P02461 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL3A1P02461 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL3A1P02461 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC6.42□□□□□ -1.38
COL3A1P02461 ZFRP1-201ENST00000457579 2970 ntBASIC6.42□□□□□ -1.38
COL3A1P02461 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC6.41□□□□□ -1.38
COL3A1P02461 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL3A1P02461 MIR141-201ENST00000384975 95 ntBASIC6.41□□□□□ -1.38
COL3A1P02461 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC6.41□□□□□ -1.38
COL3A1P02461 AC244453.4-201ENST00000419150 388 ntBASIC6.41□□□□□ -1.38
COL3A1P02461 AC006466.1-201ENST00000438721 289 ntBASIC6.41□□□□□ -1.38
COL3A1P02461 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC6.41□□□□□ -1.38
COL3A1P02461 OFD1P3Y-201ENST00000453312 783 ntBASIC6.41□□□□□ -1.38
COL3A1P02461 RPS5P7-201ENST00000456664 608 ntBASIC6.41□□□□□ -1.38
COL3A1P02461 DAP3-209ENST00000465375 729 ntTSL 2 BASIC6.41□□□□□ -1.38
COL3A1P02461 LARP7P4-201ENST00000481075 878 ntBASIC6.41□□□□□ -1.38
COL3A1P02461 CEACAMP10-202ENST00000495431 496 ntBASIC6.41□□□□□ -1.38
COL3A1P02461 UBE2V1P12-201ENST00000503954 474 ntBASIC6.41□□□□□ -1.38
COL3A1P02461 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC6.41□□□□□ -1.38
COL3A1P02461 RN7SKP276-201ENST00000516242 268 ntBASIC6.41□□□□□ -1.38
COL3A1P02461 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC6.41□□□□□ -1.38
COL3A1P02461 AC073091.2-201ENST00000603205 907 ntBASIC6.41□□□□□ -1.38
COL3A1P02461 FAM27B-201ENST00000610601 213 ntBASIC6.41□□□□□ -1.38
COL3A1P02461 AC091046.2-201ENST00000620775 665 ntBASIC6.41□□□□□ -1.38
COL3A1P02461 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC6.41□□□□□ -1.38
COL3A1P02461 AC008993.2-201ENST00000631744 806 ntBASIC6.41□□□□□ -1.38
COL3A1P02461 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC6.41□□□□□ -1.38
COL3A1P02461 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL3A1P02461 ACTR3BP5-201ENST00000448440 1479 ntBASIC6.41□□□□□ -1.38
COL3A1P02461 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL3A1P02461 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL3A1P02461 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL3A1P02461 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC6.41□□□□□ -1.38
COL3A1P02461 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
COL3A1P02461 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL3A1P02461 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL3A1P02461 RNA5SP187-201ENST00000384400 119 ntBASIC6.41□□□□□ -1.38
COL3A1P02461 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC6.41□□□□□ -1.38
COL3A1P02461 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC6.41□□□□□ -1.38
COL3A1P02461 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC6.41□□□□□ -1.38
COL3A1P02461 OR2X1P-201ENST00000421144 687 ntBASIC6.41□□□□□ -1.38
COL3A1P02461 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC6.41□□□□□ -1.38
COL3A1P02461 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC6.41□□□□□ -1.38
COL3A1P02461 MTATP6P26-201ENST00000445926 662 ntBASIC6.41□□□□□ -1.38
COL3A1P02461 RHEBP2-201ENST00000450289 600 ntBASIC6.41□□□□□ -1.38
COL3A1P02461 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC6.41□□□□□ -1.38
COL3A1P02461 RPL36AP41-201ENST00000493820 306 ntBASIC6.41□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms