Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.95□□□□□ -1.62
SHOX2O60902 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SHOX2O60902 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
SHOX2O60902 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
SHOX2O60902 RNA5SP132-201ENST00000364725 118 ntBASIC4.95□□□□□ -1.62
SHOX2O60902 AL050305.1-201ENST00000399993 1230 ntBASIC4.95□□□□□ -1.62
SHOX2O60902 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
SHOX2O60902 FMO7P-201ENST00000436045 768 ntBASIC4.95□□□□□ -1.62
SHOX2O60902 PRPF38AP2-201ENST00000438179 851 ntBASIC4.95□□□□□ -1.62
SHOX2O60902 RPS29P10-201ENST00000439197 166 ntBASIC4.95□□□□□ -1.62
SHOX2O60902 RPL21P133-201ENST00000443666 476 ntBASIC4.95□□□□□ -1.62
SHOX2O60902 AL450996.1-201ENST00000445574 1202 ntBASIC4.95□□□□□ -1.62
SHOX2O60902 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC4.95□□□□□ -1.62
SHOX2O60902 AC104651.2-201ENST00000447549 528 ntBASIC4.95□□□□□ -1.62
SHOX2O60902 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC4.95□□□□□ -1.62
SHOX2O60902 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC4.95□□□□□ -1.62
SHOX2O60902 ATP5A1P7-201ENST00000453978 1279 ntBASIC4.95□□□□□ -1.62
SHOX2O60902 RN7SL610P-201ENST00000463845 291 ntBASIC4.95□□□□□ -1.62
SHOX2O60902 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC4.95□□□□□ -1.62
SHOX2O60902 RPL7P40-201ENST00000481703 745 ntBASIC4.95□□□□□ -1.62
SHOX2O60902 RNA5SP154-201ENST00000516193 111 ntBASIC4.95□□□□□ -1.62
SHOX2O60902 RNA5SP271-201ENST00000516700 88 ntBASIC4.95□□□□□ -1.62
SHOX2O60902 RN7SKP99-201ENST00000517028 307 ntBASIC4.95□□□□□ -1.62
SHOX2O60902 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC4.95□□□□□ -1.62
SHOX2O60902 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC4.95□□□□□ -1.62
SHOX2O60902 RBM22P12-201ENST00000567098 1255 ntBASIC4.95□□□□□ -1.62
SHOX2O60902 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.95□□□□□ -1.62
SHOX2O60902 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.95□□□□□ -1.62
SHOX2O60902 AC005520.3-201ENST00000602874 370 ntBASIC4.95□□□□□ -1.62
SHOX2O60902 AL139395.1-201ENST00000603662 160 ntBASIC4.95□□□□□ -1.62
SHOX2O60902 AL096712.1-201ENST00000614561 159 ntBASIC4.95□□□□□ -1.62
SHOX2O60902 RPSAP73-201ENST00000614820 330 ntBASIC4.95□□□□□ -1.62
SHOX2O60902 AC023509.5-201ENST00000617434 807 ntBASIC4.95□□□□□ -1.62
SHOX2O60902 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC4.95□□□□□ -1.62
SHOX2O60902 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC4.95□□□□□ -1.62
SHOX2O60902 MIR193BHG-214ENST00000641765 509 ntBASIC4.95□□□□□ -1.62
SHOX2O60902 AL138820.1-201ENST00000617901 5305 ntBASIC4.95□□□□□ -1.62
SHOX2O60902 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SHOX2O60902 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
SHOX2O60902 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
SHOX2O60902 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
SHOX2O60902 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC4.95□□□□□ -1.62
SHOX2O60902 NEAT1-202ENST00000501122 22743 ntBASIC4.95□□□□□ -1.62
SHOX2O60902 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SHOX2O60902 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
SHOX2O60902 MUC2-202ENST00000613187 4845 ntBASIC4.94□□□□□ -1.62
SHOX2O60902 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
SHOX2O60902 TOPORSLP1-201ENST00000467693 2102 ntBASIC4.94□□□□□ -1.62
SHOX2O60902 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.94□□□□□ -1.62
SHOX2O60902 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SHOX2O60902 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC4.94□□□□□ -1.62
SHOX2O60902 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
SHOX2O60902 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.94□□□□□ -1.62
SHOX2O60902 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.94□□□□□ -1.62
SHOX2O60902 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
SHOX2O60902 MIR323A-201ENST00000362199 86 ntBASIC4.94□□□□□ -1.62
SHOX2O60902 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
SHOX2O60902 PPCS-201ENST00000372556 984 ntTSL 2 BASIC4.94□□□□□ -1.62
SHOX2O60902 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
SHOX2O60902 ATP5HP3-201ENST00000396994 486 ntBASIC4.94□□□□□ -1.62
SHOX2O60902 CDY17P-201ENST00000414121 1282 ntBASIC4.94□□□□□ -1.62
SHOX2O60902 SDHDP6-201ENST00000414693 480 ntBASIC4.94□□□□□ -1.62
SHOX2O60902 GTF3AP1-201ENST00000416942 1004 ntBASIC4.94□□□□□ -1.62
SHOX2O60902 VN1R37P-201ENST00000419096 748 ntBASIC4.94□□□□□ -1.62
SHOX2O60902 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC4.94□□□□□ -1.62
SHOX2O60902 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC4.94□□□□□ -1.62
SHOX2O60902 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC4.94□□□□□ -1.62
SHOX2O60902 AC069285.2-201ENST00000440210 275 ntBASIC4.94□□□□□ -1.62
SHOX2O60902 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC4.94□□□□□ -1.62
SHOX2O60902 AC011753.3-201ENST00000443436 406 ntBASIC4.94□□□□□ -1.62
SHOX2O60902 OR2A1-AS1-202ENST00000467944 422 ntBASIC4.94□□□□□ -1.62
SHOX2O60902 AC091544.1-201ENST00000484702 348 ntBASIC4.94□□□□□ -1.62
SHOX2O60902 OR2A3P-201ENST00000493774 953 ntBASIC4.94□□□□□ -1.62
SHOX2O60902 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SHOX2O60902 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC4.94□□□□□ -1.62
SHOX2O60902 IGLV3-26-201ENST00000520756 302 ntBASIC4.94□□□□□ -1.62
SHOX2O60902 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SHOX2O60902 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SHOX2O60902 DYNLL1P4-201ENST00000549314 266 ntBASIC4.94□□□□□ -1.62
SHOX2O60902 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC4.94□□□□□ -1.62
SHOX2O60902 AP005119.2-201ENST00000579735 1105 ntBASIC4.94□□□□□ -1.62
SHOX2O60902 AP001496.3-201ENST00000580230 913 ntBASIC4.94□□□□□ -1.62
SHOX2O60902 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC4.94□□□□□ -1.62
SHOX2O60902 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC4.94□□□□□ -1.62
SHOX2O60902 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
SHOX2O60902 AC008638.3-201ENST00000603341 463 ntBASIC4.94□□□□□ -1.62
SHOX2O60902 AC087783.2-201ENST00000605070 562 ntBASIC4.94□□□□□ -1.62
SHOX2O60902 AC211433.2-201ENST00000608433 387 ntBASIC4.94□□□□□ -1.62
SHOX2O60902 AC008115.3-201ENST00000614874 549 ntBASIC4.94□□□□□ -1.62
SHOX2O60902 LINC00901.1-201ENST00000617252 152 ntBASIC4.94□□□□□ -1.62
SHOX2O60902 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC4.94□□□□□ -1.62
SHOX2O60902 CGA-206ENST00000630630 832 ntTSL 2 BASIC4.94□□□□□ -1.62
SHOX2O60902 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SHOX2O60902 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SHOX2O60902 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SHOX2O60902 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC4.94□□□□□ -1.62
SHOX2O60902 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC4.94□□□□□ -1.62
SHOX2O60902 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
SHOX2O60902 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
SHOX2O60902 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms