Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 AC090568.1-201ENST00000509499 856 ntBASIC5.9□□□□□ -1.46
FOXN3O00409 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.9□□□□□ -1.46
FOXN3O00409 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC5.9□□□□□ -1.46
FOXN3O00409 AC011611.5-201ENST00000552477 578 ntBASIC5.9□□□□□ -1.46
FOXN3O00409 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
FOXN3O00409 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
FOXN3O00409 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
FOXN3O00409 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC5.9□□□□□ -1.46
FOXN3O00409 AL109741.3-201ENST00000561748 592 ntBASIC5.9□□□□□ -1.46
FOXN3O00409 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.9□□□□□ -1.46
FOXN3O00409 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC5.9□□□□□ -1.46
FOXN3O00409 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC5.9□□□□□ -1.46
FOXN3O00409 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.9□□□□□ -1.46
FOXN3O00409 AL606834.3-201ENST00000602615 496 ntBASIC5.9□□□□□ -1.46
FOXN3O00409 Z82195.1-201ENST00000604558 398 ntBASIC5.9□□□□□ -1.46
FOXN3O00409 AC010632.3-201ENST00000611377 369 ntBASIC5.9□□□□□ -1.46
FOXN3O00409 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC5.9□□□□□ -1.46
FOXN3O00409 AC109809.1-201ENST00000619665 545 ntBASIC5.9□□□□□ -1.46
FOXN3O00409 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC5.9□□□□□ -1.46
FOXN3O00409 AC083865.1-201ENST00000636634 831 ntBASIC5.9□□□□□ -1.46
FOXN3O00409 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC5.9□□□□□ -1.47
FOXN3O00409 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
FOXN3O00409 AL121950.1-201ENST00000624993 2077 ntBASIC5.9□□□□□ -1.47
FOXN3O00409 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.9□□□□□ -1.47
FOXN3O00409 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
FOXN3O00409 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.47
FOXN3O00409 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
FOXN3O00409 AC100757.1-201ENST00000616872 1835 ntBASIC5.9□□□□□ -1.47
FOXN3O00409 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
FOXN3O00409 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.9□□□□□ -1.47
FOXN3O00409 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
FOXN3O00409 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
FOXN3O00409 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
FOXN3O00409 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
FOXN3O00409 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
FOXN3O00409 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
FOXN3O00409 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
FOXN3O00409 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
FOXN3O00409 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
FOXN3O00409 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
FOXN3O00409 RNA5SP46-201ENST00000362370 120 ntBASIC5.89□□□□□ -1.47
FOXN3O00409 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC5.89□□□□□ -1.47
FOXN3O00409 U6.112-201ENST00000384129 70 ntBASIC5.89□□□□□ -1.47
FOXN3O00409 MIR551A-201ENST00000385042 96 ntBASIC5.89□□□□□ -1.47
FOXN3O00409 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
FOXN3O00409 HMGB3P18-201ENST00000406327 590 ntBASIC5.89□□□□□ -1.47
FOXN3O00409 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC5.89□□□□□ -1.47
FOXN3O00409 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC5.89□□□□□ -1.47
FOXN3O00409 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
FOXN3O00409 RPL34P3-201ENST00000421454 338 ntBASIC5.89□□□□□ -1.47
FOXN3O00409 AL354766.1-201ENST00000423396 542 ntBASIC5.89□□□□□ -1.47
FOXN3O00409 AC115285.1-201ENST00000424879 736 ntBASIC5.89□□□□□ -1.47
FOXN3O00409 RPS27AP6-201ENST00000427962 448 ntBASIC5.89□□□□□ -1.47
FOXN3O00409 FMO7P-201ENST00000436045 768 ntBASIC5.89□□□□□ -1.47
FOXN3O00409 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.89□□□□□ -1.47
FOXN3O00409 AC019185.1-201ENST00000442718 389 ntBASIC5.89□□□□□ -1.47
FOXN3O00409 AL358876.1-201ENST00000453364 1075 ntBASIC5.89□□□□□ -1.47
FOXN3O00409 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC5.89□□□□□ -1.47
FOXN3O00409 RNU6-1004P-201ENST00000516584 111 ntBASIC5.89□□□□□ -1.47
FOXN3O00409 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC5.89□□□□□ -1.47
FOXN3O00409 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC5.89□□□□□ -1.47
FOXN3O00409 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.89□□□□□ -1.47
FOXN3O00409 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC5.89□□□□□ -1.47
FOXN3O00409 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.89□□□□□ -1.47
FOXN3O00409 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC5.89□□□□□ -1.47
FOXN3O00409 OR11H3P-201ENST00000554547 982 ntBASIC5.89□□□□□ -1.47
FOXN3O00409 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.89□□□□□ -1.47
FOXN3O00409 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.89□□□□□ -1.47
FOXN3O00409 CLIC4P2-201ENST00000601934 717 ntBASIC5.89□□□□□ -1.47
FOXN3O00409 AP000769.2-201ENST00000602344 396 ntBASIC5.89□□□□□ -1.47
FOXN3O00409 AL022067.1-201ENST00000602426 454 ntBASIC5.89□□□□□ -1.47
FOXN3O00409 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC5.89□□□□□ -1.47
FOXN3O00409 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.89□□□□□ -1.47
FOXN3O00409 AC008115.3-201ENST00000614874 549 ntBASIC5.89□□□□□ -1.47
FOXN3O00409 AC135068.5-201ENST00000624197 983 ntBASIC5.89□□□□□ -1.47
FOXN3O00409 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC5.89□□□□□ -1.47
FOXN3O00409 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC5.89□□□□□ -1.47
FOXN3O00409 Z95114.1-201ENST00000624264 14574 ntBASIC5.89□□□□□ -1.47
FOXN3O00409 AC003973.3-201ENST00000624863 2822 ntBASIC5.89□□□□□ -1.47
FOXN3O00409 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
FOXN3O00409 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
FOXN3O00409 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
FOXN3O00409 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
FOXN3O00409 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.89□□□□□ -1.47
FOXN3O00409 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.89□□□□□ -1.47
FOXN3O00409 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
FOXN3O00409 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
FOXN3O00409 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
FOXN3O00409 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
FOXN3O00409 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
FOXN3O00409 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.88□□□□□ -1.47
FOXN3O00409 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.88□□□□□ -1.47
FOXN3O00409 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
FOXN3O00409 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
FOXN3O00409 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
FOXN3O00409 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
FOXN3O00409 SNORA16A-201ENST00000384342 137 ntBASIC5.88□□□□□ -1.47
FOXN3O00409 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
FOXN3O00409 RPS27AP11-201ENST00000402798 447 ntBASIC5.88□□□□□ -1.47
FOXN3O00409 SNORA11.3-201ENST00000408471 128 ntBASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 120.7 ms