Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 SNORD56.6-201ENST00000384569 71 ntBASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 AC136624.1-201ENST00000400791 413 ntBASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 MTND4LP13-201ENST00000425022 298 ntBASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 AL360081.1-201ENST00000428299 555 ntBASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 RN7SL860P-201ENST00000473738 223 ntBASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 AC105233.1-201ENST00000498840 781 ntBASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 snoU109.6-201ENST00000516831 118 ntBASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 AC109635.6-201ENST00000525487 1113 ntBASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 AC087783.2-201ENST00000605070 562 ntBASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 AC091905.4-201ENST00000623432 202 ntBASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 NXF4-202ENST00000416098 1465 ntBASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 AC092747.4-201ENST00000620519 1861 ntBASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
TM9SF3Q9HD45 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 AC107027.3-201ENST00000565095 3473 ntBASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 MFSD4BP1-201ENST00000513330 1552 ntBASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 U3.3-201ENST00000362986 216 ntBASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 NUDT19P3-201ENST00000404698 555 ntBASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 GJA6P-201ENST00000415117 1042 ntBASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 RPL31P44-201ENST00000447680 377 ntBASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 AC097484.1-201ENST00000471148 389 ntBASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 RPS29P22-201ENST00000472363 168 ntBASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 AC091912.1-201ENST00000511351 248 ntBASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 OR11H3P-201ENST00000554547 982 ntBASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 FAM106CP-201ENST00000582212 507 ntBASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 AC009237.13-201ENST00000603193 276 ntBASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 AC026367.3-201ENST00000619032 590 ntBASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 AC135068.5-201ENST00000624197 983 ntBASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.22□□□□□ -1.57
TM9SF3Q9HD45 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms