Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 IGBP1P1-201ENST00000554337 1009 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 AL049872.1-201ENST00000556323 322 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 AC114947.2-201ENST00000565748 2125 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 AC233266.2-201ENST00000567067 528 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 AC010547.6-201ENST00000571789 193 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 MIR4505-201ENST00000582238 73 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 AC009027.1-201ENST00000604510 479 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
NKX3-1Q99801 AC024933.1-201ENST00000608472 348 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 AP000894.4-201ENST00000610185 483 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 AL691477.1-201ENST00000624398 162 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
NKX3-1Q99801 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 AC104260.2-201ENST00000623551 3497 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
NKX3-1Q99801 AC083899.2-201ENST00000423285 1376 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
NKX3-1Q99801 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
NKX3-1Q99801 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
NKX3-1Q99801 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 OSBPL9P1-201ENST00000604744 1469 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
NKX3-1Q99801 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
NKX3-1Q99801 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
NKX3-1Q99801 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
NKX3-1Q99801 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC4.61□□□□□ -1.67
NKX3-1Q99801 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
NKX3-1Q99801 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 MIR137-201ENST00000385223 102 ntBASIC4.61□□□□□ -1.67
NKX3-1Q99801 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
NKX3-1Q99801 EI24P3-201ENST00000399046 1062 ntBASIC4.61□□□□□ -1.67
NKX3-1Q99801 DBIP1-201ENST00000401435 260 ntBASIC4.61□□□□□ -1.67
NKX3-1Q99801 RN7SKP16-201ENST00000410180 299 ntBASIC4.61□□□□□ -1.67
NKX3-1Q99801 PTP4A1P1-201ENST00000420539 515 ntBASIC4.61□□□□□ -1.67
NKX3-1Q99801 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 AC079355.1-201ENST00000421770 223 ntBASIC4.61□□□□□ -1.67
NKX3-1Q99801 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 SUMO2P3-201ENST00000438311 288 ntBASIC4.61□□□□□ -1.67
NKX3-1Q99801 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 AC023141.9-201ENST00000458734 412 ntBASIC4.61□□□□□ -1.67
NKX3-1Q99801 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 RN7SL273P-201ENST00000481561 299 ntBASIC4.61□□□□□ -1.67
NKX3-1Q99801 EIF3LP3-201ENST00000495197 822 ntBASIC4.61□□□□□ -1.67
NKX3-1Q99801 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 MTND6P2-201ENST00000512226 524 ntBASIC4.61□□□□□ -1.67
NKX3-1Q99801 SNORA76.2-201ENST00000517095 137 ntBASIC4.61□□□□□ -1.67
NKX3-1Q99801 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 AC100784.1-201ENST00000522790 310 ntBASIC4.61□□□□□ -1.67
NKX3-1Q99801 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 AC012616.1-201ENST00000600294 197 ntBASIC4.61□□□□□ -1.67
NKX3-1Q99801 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 AL451049.1-201ENST00000608672 497 ntBASIC4.61□□□□□ -1.67
NKX3-1Q99801 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 MIR6768-201ENST00000610734 72 ntBASIC4.61□□□□□ -1.67
NKX3-1Q99801 AC008115.3-201ENST00000614874 549 ntBASIC4.61□□□□□ -1.67
NKX3-1Q99801 MIR1264-201ENST00000616374 69 ntBASIC4.61□□□□□ -1.67
NKX3-1Q99801 AL645927.2-201ENST00000618350 349 ntBASIC4.61□□□□□ -1.67
NKX3-1Q99801 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 AFP-201ENST00000226359 1914 ntTSL 5 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 ALB-214ENST00000509063 1911 ntTSL 5 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
NKX3-1Q99801 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.61□□□□□ -1.67
NKX3-1Q99801 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
NKX3-1Q99801 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
NKX3-1Q99801 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
NKX3-1Q99801 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC4.61□□□□□ -1.67
NKX3-1Q99801 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
NKX3-1Q99801 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
NKX3-1Q99801 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms