Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC022884.2-201ENST00000578535 580 ntBASIC5.1□□□□□ -1.59
VPS35Q96QK1 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC5.1□□□□□ -1.59
VPS35Q96QK1 AC006116.3-201ENST00000592968 361 ntBASIC5.1□□□□□ -1.59
VPS35Q96QK1 AC009163.6-201ENST00000612367 342 ntBASIC5.1□□□□□ -1.59
VPS35Q96QK1 AC016769.4-201ENST00000616893 535 ntBASIC5.1□□□□□ -1.59
VPS35Q96QK1 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.1□□□□□ -1.59
VPS35Q96QK1 AC091932.2-201ENST00000623014 291 ntBASIC5.1□□□□□ -1.59
VPS35Q96QK1 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC5.1□□□□□ -1.59
VPS35Q96QK1 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
VPS35Q96QK1 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
VPS35Q96QK1 CASC19-221ENST00000641309 1382 ntBASIC5.1□□□□□ -1.59
VPS35Q96QK1 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
VPS35Q96QK1 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
VPS35Q96QK1 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC5.1□□□□□ -1.59
VPS35Q96QK1 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
VPS35Q96QK1 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
VPS35Q96QK1 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.1□□□□□ -1.59
VPS35Q96QK1 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.1□□□□□ -1.59
VPS35Q96QK1 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.1□□□□□ -1.59
VPS35Q96QK1 THAP12P4-201ENST00000528321 2266 ntBASIC5.09□□□□□ -1.59
VPS35Q96QK1 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.09□□□□□ -1.59
VPS35Q96QK1 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
VPS35Q96QK1 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC5.09□□□□□ -1.59
VPS35Q96QK1 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.09□□□□□ -1.59
VPS35Q96QK1 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
VPS35Q96QK1 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
VPS35Q96QK1 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
VPS35Q96QK1 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
VPS35Q96QK1 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC5.09□□□□□ -1.59
VPS35Q96QK1 SNURFL-201ENST00000309296 343 ntBASIC5.09□□□□□ -1.59
VPS35Q96QK1 RNA5SP507-201ENST00000363603 121 ntBASIC5.09□□□□□ -1.59
VPS35Q96QK1 MIR105-2-201ENST00000385083 81 ntBASIC5.09□□□□□ -1.59
VPS35Q96QK1 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC5.09□□□□□ -1.59
VPS35Q96QK1 BMS1P13-201ENST00000417301 885 ntBASIC5.09□□□□□ -1.59
VPS35Q96QK1 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC5.09□□□□□ -1.59
VPS35Q96QK1 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC5.09□□□□□ -1.59
VPS35Q96QK1 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC5.09□□□□□ -1.59
VPS35Q96QK1 AC110749.1-201ENST00000462007 357 ntBASIC5.09□□□□□ -1.59
VPS35Q96QK1 AC020779.1-201ENST00000478757 796 ntBASIC5.09□□□□□ -1.59
VPS35Q96QK1 AC004815.1-201ENST00000484185 331 ntBASIC5.09□□□□□ -1.59
VPS35Q96QK1 AC109462.1-201ENST00000491087 368 ntBASIC5.09□□□□□ -1.59
VPS35Q96QK1 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
VPS35Q96QK1 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC5.09□□□□□ -1.59
VPS35Q96QK1 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.09□□□□□ -1.59
VPS35Q96QK1 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC5.09□□□□□ -1.59
VPS35Q96QK1 ATG10-208ENST00000513634 618 ntTSL 2 BASIC5.09□□□□□ -1.59
VPS35Q96QK1 RN7SKP260-201ENST00000516907 149 ntBASIC5.09□□□□□ -1.59
VPS35Q96QK1 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC5.09□□□□□ -1.59
VPS35Q96QK1 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC5.09□□□□□ -1.59
VPS35Q96QK1 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC5.09□□□□□ -1.59
VPS35Q96QK1 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.09□□□□□ -1.59
VPS35Q96QK1 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
VPS35Q96QK1 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.09□□□□□ -1.59
VPS35Q96QK1 AC092490.3-201ENST00000545370 572 ntBASIC5.09□□□□□ -1.59
VPS35Q96QK1 AC040958.1-201ENST00000561102 201 ntBASIC5.09□□□□□ -1.59
VPS35Q96QK1 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC5.09□□□□□ -1.59
VPS35Q96QK1 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.09□□□□□ -1.59
VPS35Q96QK1 BNIP3P35-201ENST00000604530 490 ntBASIC5.09□□□□□ -1.59
VPS35Q96QK1 SSX9-202ENST00000608568 580 ntTSL 4 BASIC5.09□□□□□ -1.59
VPS35Q96QK1 AC117490.2-201ENST00000610042 594 ntBASIC5.09□□□□□ -1.59
VPS35Q96QK1 AC018445.2-201ENST00000622987 260 ntBASIC5.09□□□□□ -1.59
VPS35Q96QK1 TEX41-254ENST00000626394 423 ntTSL 5 BASIC5.09□□□□□ -1.59
VPS35Q96QK1 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC5.09□□□□□ -1.59
VPS35Q96QK1 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.09□□□□□ -1.59
VPS35Q96QK1 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.09□□□□□ -1.59
VPS35Q96QK1 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
VPS35Q96QK1 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.09□□□□□ -1.6
VPS35Q96QK1 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.09□□□□□ -1.6
VPS35Q96QK1 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS35Q96QK1 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS35Q96QK1 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
VPS35Q96QK1 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5.08□□□□□ -1.6
VPS35Q96QK1 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
VPS35Q96QK1 RNU1-106P-201ENST00000384382 164 ntBASIC5.08□□□□□ -1.6
VPS35Q96QK1 AC005522.1-201ENST00000395416 346 ntBASIC5.08□□□□□ -1.6
VPS35Q96QK1 GAPDHP15-201ENST00000398586 975 ntBASIC5.08□□□□□ -1.6
VPS35Q96QK1 AL390316.1-201ENST00000406279 553 ntBASIC5.08□□□□□ -1.6
VPS35Q96QK1 MRM2-202ENST00000407040 582 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS35Q96QK1 SPTLC1P2-201ENST00000407089 121 ntBASIC5.08□□□□□ -1.6
VPS35Q96QK1 RN7SKP114-201ENST00000410327 279 ntBASIC5.08□□□□□ -1.6
VPS35Q96QK1 RN7SKP213-201ENST00000410746 298 ntBASIC5.08□□□□□ -1.6
VPS35Q96QK1 DPPA2P3-201ENST00000411853 655 ntBASIC5.08□□□□□ -1.6
VPS35Q96QK1 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS35Q96QK1 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS35Q96QK1 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC5.08□□□□□ -1.6
VPS35Q96QK1 RPL34P6-201ENST00000432390 345 ntBASIC5.08□□□□□ -1.6
VPS35Q96QK1 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS35Q96QK1 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS35Q96QK1 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS35Q96QK1 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS35Q96QK1 PRPF38AP1-201ENST00000451976 933 ntBASIC5.08□□□□□ -1.6
VPS35Q96QK1 TSACC-207ENST00000470342 601 ntTSL 2 BASIC5.08□□□□□ -1.6
VPS35Q96QK1 AC090114.3-201ENST00000479267 829 ntBASIC5.08□□□□□ -1.6
VPS35Q96QK1 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.08□□□□□ -1.6
VPS35Q96QK1 ENPP7P11-201ENST00000505915 627 ntBASIC5.08□□□□□ -1.6
VPS35Q96QK1 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC5.08□□□□□ -1.6
VPS35Q96QK1 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS35Q96QK1 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS35Q96QK1 HMGN2P6-201ENST00000551091 273 ntBASIC5.08□□□□□ -1.6
VPS35Q96QK1 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 151.3 ms