Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 MAPK10-263ENST00000641052 4307 ntBASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 RNA5SP171-201ENST00000391071 115 ntBASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 AL390316.1-201ENST00000406279 553 ntBASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 RN7SKP16-201ENST00000410180 299 ntBASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 AC016831.4-201ENST00000438302 307 ntBASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 RPS29P9-201ENST00000440360 171 ntBASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 AC114755.5-201ENST00000447760 831 ntBASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 AC093815.1-201ENST00000508637 280 ntBASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 AC097486.1-201ENST00000515331 210 ntBASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 MIR4715-201ENST00000584117 79 ntBASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 AL121890.3-201ENST00000618494 516 ntBASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 ERVFRD-3-201ENST00000578561 1617 ntBASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 NSF-206ENST00000575068 2667 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC6.02□□□□□ -1.44
CCDC88AQ3V6T2 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.44
CCDC88AQ3V6T2 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.44
CCDC88AQ3V6T2 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC6.02□□□□□ -1.44
CCDC88AQ3V6T2 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC6.02□□□□□ -1.44
CCDC88AQ3V6T2 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC6.02□□□□□ -1.44
CCDC88AQ3V6T2 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC6.02□□□□□ -1.44
CCDC88AQ3V6T2 RN7SL189P-201ENST00000468631 289 ntBASIC6.02□□□□□ -1.44
CCDC88AQ3V6T2 SSR3-206ENST00000476217 807 ntTSL 3 BASIC6.02□□□□□ -1.44
CCDC88AQ3V6T2 MAL2-201ENST00000522112 573 ntTSL 4 BASIC6.02□□□□□ -1.44
CCDC88AQ3V6T2 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.44
CCDC88AQ3V6T2 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC6.02□□□□□ -1.44
CCDC88AQ3V6T2 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC6.02□□□□□ -1.44
CCDC88AQ3V6T2 IGKV1OR2-9-201ENST00000603957 287 ntBASIC6.02□□□□□ -1.44
CCDC88AQ3V6T2 IGKV1OR2-11-201ENST00000604120 287 ntBASIC6.02□□□□□ -1.44
CCDC88AQ3V6T2 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 ATF6-201ENST00000367942 7496 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 AC099654.2-201ENST00000433031 1980 ntBASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 NUDT19P3-201ENST00000404698 555 ntBASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 RNU6ATAC34P-201ENST00000408879 121 ntBASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 AC006065.1-201ENST00000422539 802 ntBASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 AC020779.1-201ENST00000478757 796 ntBASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 AC020593.1-201ENST00000507399 299 ntBASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 IGKV3OR22-2-201ENST00000517943 313 ntBASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 AC116553.2-201ENST00000564203 463 ntBASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 AC022884.2-201ENST00000578535 580 ntBASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC88AQ3V6T2 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 SNORA73.1-201ENST00000363107 205 ntBASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 SNORA48.7-201ENST00000391302 135 ntBASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 RPL32P23-201ENST00000397237 405 ntBASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 Z97832.1-201ENST00000402490 328 ntBASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 AL021331.1-201ENST00000402817 582 ntBASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 U3.32-201ENST00000408116 212 ntBASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 LINC01881-201ENST00000416103 412 ntBASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 GAPDHP14-201ENST00000450472 937 ntBASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 FPGT-203ENST00000467578 601 ntTSL 2 BASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 ENPP7P11-201ENST00000505915 627 ntBASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 AC027216.1-201ENST00000577726 685 ntBASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 RBPJP2-201ENST00000618187 1444 ntBASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 ABCC13-202ENST00000463099 3842 ntBASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 SMG1P7-201ENST00000565246 2704 ntBASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 AL122126.1-201ENST00000546905 1318 ntBASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC88AQ3V6T2 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms