Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC4.62□□□□□ -1.67
HOXA1P49639 MIR4509-3-201ENST00000578671 94 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 MIR4509-2-201ENST00000583920 94 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 AC012254.4-201ENST00000588843 273 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXA1P49639 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXA1P49639 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXA1P49639 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXA1P49639 AL137072.1-201ENST00000603444 466 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 AC099785.1-201ENST00000605697 437 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 AC245100.7-201ENST00000609678 442 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 AC087683.2-201ENST00000611384 326 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 VN1R9P-201ENST00000614184 867 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 uc_338.31-201ENST00000615595 186 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 AC140725.3-201ENST00000616193 880 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 RMST_10.1-201ENST00000616309 154 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 MIR4509-1-201ENST00000618224 94 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 TEX41-293ENST00000630451 690 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXA1P49639 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.62□□□□□ -1.67
HOXA1P49639 AC008432.1-201ENST00000615912 1320 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 AC100778.3-201ENST00000580060 1750 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
HOXA1P49639 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
HOXA1P49639 EEF1A1P33-201ENST00000554413 1362 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC4.62□□□□□ -1.67
HOXA1P49639 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXA1P49639 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
HOXA1P49639 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
HOXA1P49639 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
HOXA1P49639 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.62□□□□□ -1.67
HOXA1P49639 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
HOXA1P49639 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXA1P49639 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXA1P49639 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.61□□□□□ -1.67
HOXA1P49639 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXA1P49639 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.67
HOXA1P49639 AC008627.1-201ENST00000517511 1704 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
HOXA1P49639 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXA1P49639 TLK1P1-201ENST00000456760 2440 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
HOXA1P49639 MGP-201ENST00000228938 694 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXA1P49639 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
HOXA1P49639 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
HOXA1P49639 RNA5SP110-201ENST00000362638 115 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 RNU5B-4P-201ENST00000363508 111 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC4.61□□□□□ -1.67
HOXA1P49639 RNU6-207P-201ENST00000384137 107 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 SNORA68.2-201ENST00000391263 128 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 HMGB3P19-201ENST00000403971 560 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 AC016739.1-201ENST00000405359 345 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXA1P49639 OR51A6P-201ENST00000418680 1004 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXA1P49639 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXA1P49639 FABP5P3-201ENST00000437960 408 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 AL353662.1-201ENST00000439099 327 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC4.61□□□□□ -1.67
HOXA1P49639 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXA1P49639 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXA1P49639 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
HOXA1P49639 AL139824.2-201ENST00000458731 1095 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 AC098847.1-201ENST00000473094 348 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
HOXA1P49639 SSR3-206ENST00000476217 807 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXA1P49639 RPS7P6-201ENST00000485777 579 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 AC090568.1-201ENST00000509499 856 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXA1P49639 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXA1P49639 RPS27AP18-201ENST00000515536 459 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC4.61□□□□□ -1.67
HOXA1P49639 HIGD1AP18-201ENST00000520730 278 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 MAL2-205ENST00000521048 575 ntTSL 4 BASIC4.61□□□□□ -1.67
HOXA1P49639 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXA1P49639 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXA1P49639 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXA1P49639 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXA1P49639 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC4.61□□□□□ -1.67
HOXA1P49639 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC4.61□□□□□ -1.67
HOXA1P49639 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC4.61□□□□□ -1.67
HOXA1P49639 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXA1P49639 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXA1P49639 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.61□□□□□ -1.67
HOXA1P49639 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXA1P49639 AL078601.3-201ENST00000573303 535 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 MIR744-201ENST00000578242 98 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXA1P49639 MIR7853-201ENST00000584820 132 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 AL022067.1-201ENST00000602426 454 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 AC084373.1-201ENST00000603311 235 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXA1P49639 AL157392.4-201ENST00000609756 345 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXA1P49639 RNU6-1192P-201ENST00000612197 107 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
HOXA1P49639 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXA1P49639 RNU6-489P-201ENST00000618289 107 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXA1P49639 AL035661.1-201ENST00000620459 1144 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 133.5 ms