Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PTPN9P43378 SPATA2P1-201ENST00000431223 2055 ntBASIC5.54□□□□□ -1.52
PTPN9P43378 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PTPN9P43378 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.54□□□□□ -1.52
PTPN9P43378 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PTPN9P43378 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.54□□□□□ -1.52
PTPN9P43378 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
PTPN9P43378 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC5.54□□□□□ -1.52
PTPN9P43378 AC005294.1-201ENST00000355509 281 ntBASIC5.54□□□□□ -1.52
PTPN9P43378 RN7SKP160-201ENST00000363804 340 ntBASIC5.54□□□□□ -1.52
PTPN9P43378 RNU6-1257P-201ENST00000384625 110 ntBASIC5.54□□□□□ -1.52
PTPN9P43378 RN7SKP206-201ENST00000410823 293 ntBASIC5.54□□□□□ -1.52
PTPN9P43378 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC5.54□□□□□ -1.52
PTPN9P43378 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC5.54□□□□□ -1.52
PTPN9P43378 AL606495.1-201ENST00000422100 813 ntBASIC5.54□□□□□ -1.52
PTPN9P43378 AC090018.1-201ENST00000434369 367 ntBASIC5.54□□□□□ -1.52
PTPN9P43378 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC5.54□□□□□ -1.52
PTPN9P43378 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC5.54□□□□□ -1.52
PTPN9P43378 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
PTPN9P43378 NOP56P2-201ENST00000447491 769 ntBASIC5.54□□□□□ -1.52
PTPN9P43378 RPL23AP23-201ENST00000452590 471 ntBASIC5.54□□□□□ -1.52
PTPN9P43378 AC104634.1-201ENST00000452720 462 ntBASIC5.54□□□□□ -1.52
PTPN9P43378 AC239798.3-201ENST00000454459 408 ntBASIC5.54□□□□□ -1.52
PTPN9P43378 AC092691.2-201ENST00000461787 803 ntBASIC5.54□□□□□ -1.52
PTPN9P43378 RPL7P40-201ENST00000481703 745 ntBASIC5.54□□□□□ -1.52
PTPN9P43378 RN7SL814P-201ENST00000487715 300 ntBASIC5.54□□□□□ -1.52
PTPN9P43378 SUMO1P1-201ENST00000497904 306 ntBASIC5.54□□□□□ -1.52
PTPN9P43378 AC021146.7-201ENST00000509604 775 ntBASIC5.54□□□□□ -1.52
PTPN9P43378 AC010374.2-201ENST00000512933 535 ntBASIC5.54□□□□□ -1.52
PTPN9P43378 RNU6-941P-201ENST00000516346 108 ntBASIC5.54□□□□□ -1.52
PTPN9P43378 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC5.54□□□□□ -1.52
PTPN9P43378 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC5.54□□□□□ -1.52
PTPN9P43378 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC5.54□□□□□ -1.52
PTPN9P43378 AC138701.1-201ENST00000524329 714 ntBASIC5.54□□□□□ -1.52
PTPN9P43378 C1DP5-201ENST00000525775 383 ntBASIC5.54□□□□□ -1.52
PTPN9P43378 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC5.54□□□□□ -1.52
PTPN9P43378 RERGL-202ENST00000536890 367 ntTSL 3 BASIC5.54□□□□□ -1.52
PTPN9P43378 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC5.54□□□□□ -1.52
PTPN9P43378 NMNAT1P5-201ENST00000559657 841 ntBASIC5.54□□□□□ -1.52
PTPN9P43378 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PTPN9P43378 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.54□□□□□ -1.52
PTPN9P43378 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC5.54□□□□□ -1.52
PTPN9P43378 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PTPN9P43378 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC5.54□□□□□ -1.52
PTPN9P43378 AC009597.2-201ENST00000604659 592 ntBASIC5.54□□□□□ -1.52
PTPN9P43378 MIR8084-201ENST00000614105 89 ntBASIC5.54□□□□□ -1.52
PTPN9P43378 AC138965.3-201ENST00000623875 498 ntBASIC5.54□□□□□ -1.52
PTPN9P43378 METTL15-211ENST00000634762 718 ntTSL 5 BASIC5.54□□□□□ -1.52
PTPN9P43378 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.54□□□□□ -1.52
PTPN9P43378 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PTPN9P43378 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
PTPN9P43378 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
PTPN9P43378 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
PTPN9P43378 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PTPN9P43378 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.54□□□□□ -1.52
PTPN9P43378 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PTPN9P43378 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.54□□□□□ -1.52
PTPN9P43378 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
PTPN9P43378 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC5.54□□□□□ -1.52
PTPN9P43378 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
PTPN9P43378 CYP4Z2P-201ENST00000423332 1512 ntBASIC5.53□□□□□ -1.52
PTPN9P43378 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.53□□□□□ -1.52
PTPN9P43378 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
PTPN9P43378 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
PTPN9P43378 ZNF90P1-201ENST00000480493 1951 ntBASIC5.53□□□□□ -1.52
PTPN9P43378 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
PTPN9P43378 CASC19-261ENST00000641853 1638 ntBASIC5.53□□□□□ -1.52
PTPN9P43378 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
PTPN9P43378 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
PTPN9P43378 TAF9BP2-201ENST00000400856 499 ntBASIC5.53□□□□□ -1.52
PTPN9P43378 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.53□□□□□ -1.52
PTPN9P43378 AC079809.1-201ENST00000415468 276 ntBASIC5.53□□□□□ -1.52
PTPN9P43378 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC5.53□□□□□ -1.52
PTPN9P43378 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC5.53□□□□□ -1.52
PTPN9P43378 PTP4A1P3-201ENST00000433661 420 ntBASIC5.53□□□□□ -1.52
PTPN9P43378 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC5.53□□□□□ -1.52
PTPN9P43378 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
PTPN9P43378 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC5.53□□□□□ -1.52
PTPN9P43378 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC5.53□□□□□ -1.52
PTPN9P43378 LARP7P4-201ENST00000481075 878 ntBASIC5.53□□□□□ -1.52
PTPN9P43378 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC5.53□□□□□ -1.52
PTPN9P43378 RPL7P41-201ENST00000485823 957 ntBASIC5.53□□□□□ -1.52
PTPN9P43378 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC5.53□□□□□ -1.52
PTPN9P43378 AC106872.4-201ENST00000510050 523 ntBASIC5.53□□□□□ -1.52
PTPN9P43378 AC016559.2-201ENST00000510759 359 ntBASIC5.53□□□□□ -1.52
PTPN9P43378 BX510359.5-201ENST00000515651 304 ntBASIC5.53□□□□□ -1.52
PTPN9P43378 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.53□□□□□ -1.52
PTPN9P43378 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC5.53□□□□□ -1.52
PTPN9P43378 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC5.53□□□□□ -1.52
PTPN9P43378 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
PTPN9P43378 AL512310.9-201ENST00000553311 948 ntBASIC5.53□□□□□ -1.52
PTPN9P43378 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
PTPN9P43378 AC021483.2-201ENST00000567415 758 ntBASIC5.53□□□□□ -1.52
PTPN9P43378 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC5.53□□□□□ -1.52
PTPN9P43378 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC5.53□□□□□ -1.52
PTPN9P43378 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC5.53□□□□□ -1.52
PTPN9P43378 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC5.53□□□□□ -1.52
PTPN9P43378 AL022394.1-201ENST00000606979 292 ntBASIC5.53□□□□□ -1.52
PTPN9P43378 AF129408.1-201ENST00000608767 431 ntBASIC5.53□□□□□ -1.52
PTPN9P43378 AC112503.2-201ENST00000609005 552 ntBASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 145.9 ms