Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PDGFRA-206ENST00000508170 2202 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
BRCA1P38398 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC5.87□□□□□ -1.47
BRCA1P38398 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
BRCA1P38398 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
BRCA1P38398 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
BRCA1P38398 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
BRCA1P38398 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.87□□□□□ -1.47
BRCA1P38398 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC5.87□□□□□ -1.47
BRCA1P38398 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
BRCA1P38398 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC5.87□□□□□ -1.47
BRCA1P38398 AC011933.1-201ENST00000413334 321 ntBASIC5.87□□□□□ -1.47
BRCA1P38398 AL358176.3-201ENST00000420757 454 ntBASIC5.87□□□□□ -1.47
BRCA1P38398 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.87□□□□□ -1.47
BRCA1P38398 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.87□□□□□ -1.47
BRCA1P38398 RPL7AP49-201ENST00000429522 581 ntBASIC5.87□□□□□ -1.47
BRCA1P38398 AL359634.1-201ENST00000429807 1179 ntTSL 5 BASIC5.87□□□□□ -1.47
BRCA1P38398 AL591438.1-201ENST00000433508 581 ntBASIC5.87□□□□□ -1.47
BRCA1P38398 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC5.87□□□□□ -1.47
BRCA1P38398 snoU13.29-201ENST00000459370 104 ntBASIC5.87□□□□□ -1.47
BRCA1P38398 AC116533.1-201ENST00000459748 321 ntBASIC5.87□□□□□ -1.47
BRCA1P38398 AC109635.6-201ENST00000525487 1113 ntBASIC5.87□□□□□ -1.47
BRCA1P38398 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
BRCA1P38398 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC5.87□□□□□ -1.47
BRCA1P38398 ZYXP1-201ENST00000617638 118 ntBASIC5.87□□□□□ -1.47
BRCA1P38398 AC011815.3-201ENST00000624194 473 ntBASIC5.87□□□□□ -1.47
BRCA1P38398 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.87□□□□□ -1.47
BRCA1P38398 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
BRCA1P38398 BRCA1-221ENST00000493795 5732 ntTSL 5 BASIC5.87□□□□□ -1.47
BRCA1P38398 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.86□□□□□ -1.47
BRCA1P38398 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
BRCA1P38398 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.86□□□□□ -1.47
BRCA1P38398 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
BRCA1P38398 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
BRCA1P38398 OR14L1P-202ENST00000641545 3009 ntBASIC5.86□□□□□ -1.47
BRCA1P38398 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
BRCA1P38398 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
BRCA1P38398 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
BRCA1P38398 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
BRCA1P38398 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC5.86□□□□□ -1.47
BRCA1P38398 AL121657.1-201ENST00000327215 531 ntBASIC5.86□□□□□ -1.47
BRCA1P38398 RPL23AP59-201ENST00000399415 461 ntBASIC5.86□□□□□ -1.47
BRCA1P38398 RPS3AP25-201ENST00000411660 793 ntBASIC5.86□□□□□ -1.47
BRCA1P38398 CEACAMP8-201ENST00000413902 580 ntBASIC5.86□□□□□ -1.47
BRCA1P38398 AC073052.1-201ENST00000440417 714 ntBASIC5.86□□□□□ -1.47
BRCA1P38398 AC091868.1-201ENST00000508746 304 ntBASIC5.86□□□□□ -1.47
BRCA1P38398 RN7SL176P-201ENST00000580352 264 ntBASIC5.86□□□□□ -1.47
BRCA1P38398 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC5.86□□□□□ -1.47
BRCA1P38398 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC5.86□□□□□ -1.47
BRCA1P38398 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
BRCA1P38398 AC025574.1-201ENST00000554784 1653 ntBASIC5.86□□□□□ -1.47
BRCA1P38398 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
BRCA1P38398 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
BRCA1P38398 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.86□□□□□ -1.47
BRCA1P38398 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
BRCA1P38398 MAPK6PS2-201ENST00000379571 2060 ntBASIC5.86□□□□□ -1.47
BRCA1P38398 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.86□□□□□ -1.47
BRCA1P38398 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
BRCA1P38398 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
BRCA1P38398 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
BRCA1P38398 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
BRCA1P38398 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
BRCA1P38398 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC5.86□□□□□ -1.47
BRCA1P38398 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
BRCA1P38398 RNA5SP387-201ENST00000364226 106 ntBASIC5.85□□□□□ -1.47
BRCA1P38398 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC5.85□□□□□ -1.47
BRCA1P38398 PPIAP31-201ENST00000405422 495 ntBASIC5.85□□□□□ -1.47
BRCA1P38398 SLC4A1APP1-201ENST00000419995 602 ntBASIC5.85□□□□□ -1.47
BRCA1P38398 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC5.85□□□□□ -1.47
BRCA1P38398 RPL23AP83-201ENST00000434984 473 ntBASIC5.85□□□□□ -1.47
BRCA1P38398 HSFY6P-201ENST00000445573 403 ntBASIC5.85□□□□□ -1.47
BRCA1P38398 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC5.85□□□□□ -1.47
BRCA1P38398 AC073073.1-201ENST00000493920 463 ntBASIC5.85□□□□□ -1.47
BRCA1P38398 AC108475.1-201ENST00000507880 950 ntBASIC5.85□□□□□ -1.47
BRCA1P38398 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC5.85□□□□□ -1.47
BRCA1P38398 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC5.85□□□□□ -1.47
BRCA1P38398 AC084824.2-201ENST00000548906 345 ntBASIC5.85□□□□□ -1.47
BRCA1P38398 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC5.85□□□□□ -1.47
BRCA1P38398 MIR7853-201ENST00000584820 132 ntBASIC5.85□□□□□ -1.47
BRCA1P38398 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
BRCA1P38398 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC5.85□□□□□ -1.47
BRCA1P38398 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.85□□□□□ -1.47
BRCA1P38398 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC5.85□□□□□ -1.47
BRCA1P38398 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
BRCA1P38398 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
BRCA1P38398 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
BRCA1P38398 AC090017.1-201ENST00000548612 1779 ntBASIC5.85□□□□□ -1.47
BRCA1P38398 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
BRCA1P38398 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
BRCA1P38398 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.85□□□□□ -1.47
BRCA1P38398 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC5.85□□□□□ -1.47
BRCA1P38398 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC5.85□□□□□ -1.47
BRCA1P38398 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
BRCA1P38398 MIR383-201ENST00000362257 73 ntBASIC5.85□□□□□ -1.47
BRCA1P38398 RPL7AP25-201ENST00000423357 805 ntBASIC5.85□□□□□ -1.47
BRCA1P38398 RPS12P10-201ENST00000427031 377 ntBASIC5.85□□□□□ -1.47
BRCA1P38398 NDUFB4P8-201ENST00000435351 367 ntBASIC5.85□□□□□ -1.47
BRCA1P38398 AC104763.1-201ENST00000475274 360 ntBASIC5.85□□□□□ -1.47
BRCA1P38398 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC5.85□□□□□ -1.47
BRCA1P38398 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
BRCA1P38398 AC108359.1-201ENST00000616451 1211 ntBASIC5.85□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms