Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL031281.1-201ENST00000604049 488 ntBASIC5.73□□□□□ -1.49
MSX2P35548 AL136363.2-201ENST00000604173 851 ntBASIC5.73□□□□□ -1.49
MSX2P35548 CLPTM1LP1-201ENST00000604519 484 ntBASIC5.73□□□□□ -1.49
MSX2P35548 AC091769.2-201ENST00000605385 479 ntTSL 4 BASIC5.73□□□□□ -1.49
MSX2P35548 AC109347.2-201ENST00000610220 349 ntBASIC5.73□□□□□ -1.49
MSX2P35548 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
MSX2P35548 AC107075.1-201ENST00000613695 314 ntBASIC5.73□□□□□ -1.49
MSX2P35548 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC5.73□□□□□ -1.49
MSX2P35548 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC5.73□□□□□ -1.49
MSX2P35548 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC5.73□□□□□ -1.49
MSX2P35548 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC5.73□□□□□ -1.49
MSX2P35548 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC5.73□□□□□ -1.49
MSX2P35548 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSX2P35548 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSX2P35548 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSX2P35548 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSX2P35548 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.73□□□□□ -1.49
MSX2P35548 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSX2P35548 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSX2P35548 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
MSX2P35548 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.73□□□□□ -1.49
MSX2P35548 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSX2P35548 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC5.73□□□□□ -1.49
MSX2P35548 DYNC2LI1-210ENST00000605786 1346 ntAPPRIS ALT1 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSX2P35548 AC104964.3-201ENST00000606115 2860 ntBASIC5.73□□□□□ -1.49
MSX2P35548 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
MSX2P35548 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
MSX2P35548 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.72□□□□□ -1.49
MSX2P35548 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
MSX2P35548 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
MSX2P35548 AC017007.4-201ENST00000503353 1352 ntBASIC5.72□□□□□ -1.49
MSX2P35548 CASC19-248ENST00000641674 1356 ntBASIC5.72□□□□□ -1.49
MSX2P35548 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC5.72□□□□□ -1.49
MSX2P35548 SPP2-201ENST00000168148 1024 ntAPPRIS P2 TSL 1 (best) BASIC5.72□□□□□ -1.49
MSX2P35548 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC5.72□□□□□ -1.49
MSX2P35548 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
MSX2P35548 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
MSX2P35548 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
MSX2P35548 FIG4-202ENST00000368941 791 ntTSL 3 BASIC5.72□□□□□ -1.49
MSX2P35548 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
MSX2P35548 RN7SKP166-201ENST00000410812 305 ntBASIC5.72□□□□□ -1.49
MSX2P35548 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC5.72□□□□□ -1.49
MSX2P35548 OR4K6P-201ENST00000416478 897 ntBASIC5.72□□□□□ -1.49
MSX2P35548 AC023128.2-201ENST00000420880 1223 ntBASIC5.72□□□□□ -1.49
MSX2P35548 CDC42P6-201ENST00000421246 576 ntBASIC5.72□□□□□ -1.49
MSX2P35548 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC5.72□□□□□ -1.49
MSX2P35548 AL022331.1-201ENST00000429025 477 ntBASIC5.72□□□□□ -1.49
MSX2P35548 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC5.72□□□□□ -1.49
MSX2P35548 PPIAP10-201ENST00000438675 458 ntBASIC5.72□□□□□ -1.49
MSX2P35548 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC5.72□□□□□ -1.49
MSX2P35548 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
MSX2P35548 AL512593.1-201ENST00000444758 779 ntBASIC5.72□□□□□ -1.49
MSX2P35548 AP000936.2-201ENST00000447151 681 ntBASIC5.72□□□□□ -1.49
MSX2P35548 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC5.72□□□□□ -1.49
MSX2P35548 AL157896.1-201ENST00000451617 790 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
MSX2P35548 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.72□□□□□ -1.49
MSX2P35548 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
MSX2P35548 AL109741.2-201ENST00000455561 343 ntBASIC5.72□□□□□ -1.49
MSX2P35548 RBMY2EP-202ENST00000456360 940 ntBASIC5.72□□□□□ -1.49
MSX2P35548 AL133480.2-201ENST00000456723 487 ntBASIC5.72□□□□□ -1.49
MSX2P35548 AC107015.1-201ENST00000466902 747 ntBASIC5.72□□□□□ -1.49
MSX2P35548 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC5.72□□□□□ -1.49
MSX2P35548 RN7SL643P-201ENST00000471845 291 ntBASIC5.72□□□□□ -1.49
MSX2P35548 RPL7P16-201ENST00000479738 738 ntBASIC5.72□□□□□ -1.49
MSX2P35548 RPL23AP40-201ENST00000487630 390 ntBASIC5.72□□□□□ -1.49
MSX2P35548 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC5.72□□□□□ -1.49
MSX2P35548 RN7SL612P-201ENST00000497704 295 ntBASIC5.72□□□□□ -1.49
MSX2P35548 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC5.72□□□□□ -1.49
MSX2P35548 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
MSX2P35548 AC010634.1-201ENST00000513925 540 ntTSL 3 BASIC5.72□□□□□ -1.49
MSX2P35548 SEPT10P1-201ENST00000517342 1162 ntBASIC5.72□□□□□ -1.49
MSX2P35548 MTCYBP19-201ENST00000517463 1124 ntBASIC5.72□□□□□ -1.49
MSX2P35548 IGLVVII-41-1-201ENST00000518405 151 ntBASIC5.72□□□□□ -1.49
MSX2P35548 AC078899.1-201ENST00000521432 1185 ntBASIC5.72□□□□□ -1.49
MSX2P35548 AC103831.1-201ENST00000522228 422 ntTSL 3 BASIC5.72□□□□□ -1.49
MSX2P35548 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC5.72□□□□□ -1.49
MSX2P35548 AC079600.3-201ENST00000547898 447 ntTSL 5 BASIC5.72□□□□□ -1.49
MSX2P35548 OR11H3P-201ENST00000554547 982 ntBASIC5.72□□□□□ -1.49
MSX2P35548 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC5.72□□□□□ -1.49
MSX2P35548 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC5.72□□□□□ -1.49
MSX2P35548 FAM106CP-201ENST00000582212 507 ntBASIC5.72□□□□□ -1.49
MSX2P35548 AC019131.1-201ENST00000583654 622 ntTSL 5 BASIC5.72□□□□□ -1.49
MSX2P35548 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC5.72□□□□□ -1.49
MSX2P35548 AC005479.3-201ENST00000602790 431 ntBASIC5.72□□□□□ -1.49
MSX2P35548 AC021749.1-201ENST00000604322 607 ntBASIC5.72□□□□□ -1.49
MSX2P35548 AC008555.7-201ENST00000605008 583 ntBASIC5.72□□□□□ -1.49
MSX2P35548 AL357078.3-201ENST00000607528 618 ntBASIC5.72□□□□□ -1.49
MSX2P35548 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC5.72□□□□□ -1.49
MSX2P35548 VN1R7P-201ENST00000619242 903 ntBASIC5.72□□□□□ -1.49
MSX2P35548 AC091932.2-201ENST00000623014 291 ntBASIC5.72□□□□□ -1.49
MSX2P35548 AC019226.1-201ENST00000625666 515 ntBASIC5.72□□□□□ -1.49
MSX2P35548 AC022021.1-201ENST00000634334 843 ntTSL 5 BASIC5.72□□□□□ -1.49
MSX2P35548 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
MSX2P35548 AP005435.3-201ENST00000531260 3198 ntBASIC5.72□□□□□ -1.49
MSX2P35548 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
MSX2P35548 HSPD1P7-201ENST00000447985 1686 ntBASIC5.72□□□□□ -1.49
MSX2P35548 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
MSX2P35548 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
MSX2P35548 GTDC1-212ENST00000463875 1563 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
MSX2P35548 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.71□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms