Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SMARCA1P28370 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC6.29□□□□□ -1.4
SMARCA1P28370 AC007938.2-201ENST00000604666 2634 ntBASIC6.29□□□□□ -1.4
SMARCA1P28370 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SMARCA1P28370 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC6.28□□□□□ -1.4
SMARCA1P28370 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SMARCA1P28370 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SMARCA1P28370 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC6.28□□□□□ -1.4
SMARCA1P28370 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC6.28□□□□□ -1.4
SMARCA1P28370 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SMARCA1P28370 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC6.28□□□□□ -1.4
SMARCA1P28370 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SMARCA1P28370 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
SMARCA1P28370 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
SMARCA1P28370 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC6.28□□□□□ -1.4
SMARCA1P28370 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SMARCA1P28370 RNU6-252P-201ENST00000363232 107 ntBASIC6.28□□□□□ -1.4
SMARCA1P28370 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SMARCA1P28370 RNA5SP339-201ENST00000390987 122 ntBASIC6.28□□□□□ -1.4
SMARCA1P28370 RNU6-796P-201ENST00000391086 107 ntBASIC6.28□□□□□ -1.4
SMARCA1P28370 AC096533.1-201ENST00000411645 353 ntBASIC6.28□□□□□ -1.4
SMARCA1P28370 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC6.28□□□□□ -1.4
SMARCA1P28370 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC6.28□□□□□ -1.4
SMARCA1P28370 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC6.28□□□□□ -1.4
SMARCA1P28370 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SMARCA1P28370 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC6.28□□□□□ -1.4
SMARCA1P28370 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC6.28□□□□□ -1.4
SMARCA1P28370 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC6.28□□□□□ -1.4
SMARCA1P28370 CFL1P1-202ENST00000432948 411 ntBASIC6.28□□□□□ -1.4
SMARCA1P28370 AC138761.5-201ENST00000433967 325 ntBASIC6.28□□□□□ -1.4
SMARCA1P28370 AC099670.2-201ENST00000435130 321 ntBASIC6.28□□□□□ -1.4
SMARCA1P28370 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC6.28□□□□□ -1.4
SMARCA1P28370 ARAFP2-201ENST00000440565 559 ntBASIC6.28□□□□□ -1.4
SMARCA1P28370 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC6.28□□□□□ -1.4
SMARCA1P28370 AL009048.1-201ENST00000450437 298 ntBASIC6.28□□□□□ -1.4
SMARCA1P28370 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC6.28□□□□□ -1.4
SMARCA1P28370 AL139824.2-201ENST00000458731 1095 ntBASIC6.28□□□□□ -1.4
SMARCA1P28370 AC092691.2-201ENST00000461787 803 ntBASIC6.28□□□□□ -1.4
SMARCA1P28370 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
SMARCA1P28370 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SMARCA1P28370 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC6.28□□□□□ -1.4
SMARCA1P28370 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC6.28□□□□□ -1.4
SMARCA1P28370 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC6.28□□□□□ -1.4
SMARCA1P28370 SCARNA20.4-201ENST00000516969 131 ntBASIC6.28□□□□□ -1.4
SMARCA1P28370 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC6.28□□□□□ -1.4
SMARCA1P28370 HAUS1P3-201ENST00000523909 662 ntBASIC6.28□□□□□ -1.4
SMARCA1P28370 AC087894.1-201ENST00000538359 518 ntBASIC6.28□□□□□ -1.4
SMARCA1P28370 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC6.28□□□□□ -1.4
SMARCA1P28370 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC6.28□□□□□ -1.4
SMARCA1P28370 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC6.28□□□□□ -1.4
SMARCA1P28370 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC6.28□□□□□ -1.4
SMARCA1P28370 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC6.28□□□□□ -1.4
SMARCA1P28370 FKBP1AP1-201ENST00000594588 318 ntBASIC6.28□□□□□ -1.4
SMARCA1P28370 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SMARCA1P28370 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC6.28□□□□□ -1.4
SMARCA1P28370 MTCO2P22-201ENST00000603246 681 ntBASIC6.28□□□□□ -1.4
SMARCA1P28370 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC6.28□□□□□ -1.4
SMARCA1P28370 AC004908.3-201ENST00000610248 625 ntBASIC6.28□□□□□ -1.4
SMARCA1P28370 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC6.28□□□□□ -1.4
SMARCA1P28370 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC6.28□□□□□ -1.4
SMARCA1P28370 AL590396.4-201ENST00000636779 956 ntBASIC6.28□□□□□ -1.4
SMARCA1P28370 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC6.28□□□□□ -1.4
SMARCA1P28370 MRRFP1-201ENST00000435941 1675 ntBASIC6.28□□□□□ -1.4
SMARCA1P28370 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SMARCA1P28370 AC144833.1-201ENST00000567953 4089 ntBASIC6.28□□□□□ -1.4
SMARCA1P28370 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
SMARCA1P28370 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC6.28□□□□□ -1.4
SMARCA1P28370 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SMARCA1P28370 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
SMARCA1P28370 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC6.28□□□□□ -1.4
SMARCA1P28370 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
SMARCA1P28370 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC6.27□□□□□ -1.4
SMARCA1P28370 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC6.27□□□□□ -1.41
SMARCA1P28370 AC100757.1-201ENST00000616872 1835 ntBASIC6.27□□□□□ -1.41
SMARCA1P28370 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC6.27□□□□□ -1.41
SMARCA1P28370 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC6.27□□□□□ -1.41
SMARCA1P28370 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC6.27□□□□□ -1.41
SMARCA1P28370 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SMARCA1P28370 AP000473.2-201ENST00000602659 1537 ntBASIC6.27□□□□□ -1.41
SMARCA1P28370 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC6.27□□□□□ -1.41
SMARCA1P28370 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
SMARCA1P28370 RNU5E-10P-201ENST00000363506 118 ntBASIC6.27□□□□□ -1.41
SMARCA1P28370 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SMARCA1P28370 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
SMARCA1P28370 U3.28-201ENST00000391249 210 ntBASIC6.27□□□□□ -1.41
SMARCA1P28370 RNA5SP487-201ENST00000410186 122 ntBASIC6.27□□□□□ -1.41
SMARCA1P28370 RNU2-22P-201ENST00000411266 212 ntBASIC6.27□□□□□ -1.41
SMARCA1P28370 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SMARCA1P28370 AC009506.2-201ENST00000420635 840 ntBASIC6.27□□□□□ -1.41
SMARCA1P28370 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC6.27□□□□□ -1.41
SMARCA1P28370 BX276092.6-201ENST00000430476 250 ntBASIC6.27□□□□□ -1.41
SMARCA1P28370 GSTM5P1-201ENST00000434751 660 ntBASIC6.27□□□□□ -1.41
SMARCA1P28370 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC6.27□□□□□ -1.41
SMARCA1P28370 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC6.27□□□□□ -1.41
SMARCA1P28370 BX276092.8-201ENST00000455722 250 ntBASIC6.27□□□□□ -1.41
SMARCA1P28370 AC090602.1-201ENST00000469695 252 ntBASIC6.27□□□□□ -1.41
SMARCA1P28370 RPL21P18-201ENST00000469899 480 ntBASIC6.27□□□□□ -1.41
SMARCA1P28370 RPL7P6-201ENST00000480903 738 ntBASIC6.27□□□□□ -1.41
SMARCA1P28370 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC6.27□□□□□ -1.41
SMARCA1P28370 AC021146.7-201ENST00000509604 775 ntBASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms