Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HLA-DMBP28068 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC3.85□□□□□ -1.79
HLA-DMBP28068 AC105031.1-201ENST00000518550 476 ntBASIC3.85□□□□□ -1.79
HLA-DMBP28068 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC3.85□□□□□ -1.79
HLA-DMBP28068 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC3.85□□□□□ -1.79
HLA-DMBP28068 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HLA-DMBP28068 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC3.85□□□□□ -1.79
HLA-DMBP28068 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC3.85□□□□□ -1.79
HLA-DMBP28068 AC069307.1-201ENST00000602820 447 ntBASIC3.85□□□□□ -1.79
HLA-DMBP28068 AC018695.5-201ENST00000605872 315 ntBASIC3.85□□□□□ -1.79
HLA-DMBP28068 AP005131.7-201ENST00000610087 611 ntBASIC3.85□□□□□ -1.79
HLA-DMBP28068 AC126915.2-201ENST00000610957 190 ntBASIC3.85□□□□□ -1.79
HLA-DMBP28068 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC3.85□□□□□ -1.79
HLA-DMBP28068 BX005214.3-202ENST00000619809 325 ntBASIC3.85□□□□□ -1.79
HLA-DMBP28068 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC3.85□□□□□ -1.79
HLA-DMBP28068 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC3.85□□□□□ -1.79
HLA-DMBP28068 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
HLA-DMBP28068 AC000123.3-201ENST00000624029 4975 ntBASIC3.85□□□□□ -1.79
HLA-DMBP28068 AC109780.1-201ENST00000451768 1344 ntBASIC3.85□□□□□ -1.79
HLA-DMBP28068 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
HLA-DMBP28068 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HLA-DMBP28068 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
HLA-DMBP28068 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HLA-DMBP28068 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
HLA-DMBP28068 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HLA-DMBP28068 ZNF733P-202ENST00000444809 1573 ntBASIC3.85□□□□□ -1.79
HLA-DMBP28068 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
HLA-DMBP28068 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
HLA-DMBP28068 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
HLA-DMBP28068 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC3.84□□□□□ -1.79
HLA-DMBP28068 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC3.84□□□□□ -1.79
HLA-DMBP28068 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC3.84□□□□□ -1.79
HLA-DMBP28068 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC3.84□□□□□ -1.79
HLA-DMBP28068 RNA5SP507-201ENST00000363603 121 ntBASIC3.84□□□□□ -1.79
HLA-DMBP28068 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
HLA-DMBP28068 AC013442.1-201ENST00000397347 228 ntBASIC3.84□□□□□ -1.79
HLA-DMBP28068 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HLA-DMBP28068 RPL10P10-201ENST00000403509 664 ntBASIC3.84□□□□□ -1.79
HLA-DMBP28068 AC233289.1-201ENST00000403700 508 ntBASIC3.84□□□□□ -1.79
HLA-DMBP28068 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC3.84□□□□□ -1.79
HLA-DMBP28068 AC108075.1-201ENST00000424692 529 ntBASIC3.84□□□□□ -1.79
HLA-DMBP28068 RPS4XP16-201ENST00000427198 791 ntBASIC3.84□□□□□ -1.79
HLA-DMBP28068 BX323845.1-201ENST00000432417 179 ntBASIC3.84□□□□□ -1.79
HLA-DMBP28068 OR52B5P-201ENST00000435337 951 ntBASIC3.84□□□□□ -1.79
HLA-DMBP28068 TMX2P1-201ENST00000436507 708 ntBASIC3.84□□□□□ -1.79
HLA-DMBP28068 AC245047.2-201ENST00000441060 530 ntBASIC3.84□□□□□ -1.79
HLA-DMBP28068 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC3.84□□□□□ -1.79
HLA-DMBP28068 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC3.84□□□□□ -1.79
HLA-DMBP28068 EEF1B2P5-201ENST00000444820 548 ntBASIC3.84□□□□□ -1.79
HLA-DMBP28068 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC3.84□□□□□ -1.79
HLA-DMBP28068 MRPL35P2-201ENST00000448009 511 ntBASIC3.84□□□□□ -1.79
HLA-DMBP28068 AL645937.3-201ENST00000453647 936 ntBASIC3.84□□□□□ -1.79
HLA-DMBP28068 Z92846.1-201ENST00000456203 268 ntBASIC3.84□□□□□ -1.79
HLA-DMBP28068 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC3.84□□□□□ -1.79
HLA-DMBP28068 AL591473.1-201ENST00000464297 313 ntBASIC3.84□□□□□ -1.79
HLA-DMBP28068 RN7SL443P-201ENST00000464331 290 ntBASIC3.84□□□□□ -1.79
HLA-DMBP28068 DAP3-209ENST00000465375 729 ntTSL 2 BASIC3.84□□□□□ -1.79
HLA-DMBP28068 AC005532.2-201ENST00000467154 373 ntBASIC3.84□□□□□ -1.79
HLA-DMBP28068 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC3.84□□□□□ -1.79
HLA-DMBP28068 AC008953.1-201ENST00000497334 318 ntBASIC3.84□□□□□ -1.79
HLA-DMBP28068 AC093763.2-201ENST00000505334 1223 ntBASIC3.84□□□□□ -1.79
HLA-DMBP28068 GTF2F2P1-201ENST00000511083 675 ntBASIC3.84□□□□□ -1.79
HLA-DMBP28068 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC3.84□□□□□ -1.79
HLA-DMBP28068 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC3.84□□□□□ -1.79
HLA-DMBP28068 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC3.84□□□□□ -1.79
HLA-DMBP28068 PYM1-205ENST00000547925 499 ntTSL 3 BASIC3.84□□□□□ -1.79
HLA-DMBP28068 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC3.84□□□□□ -1.79
HLA-DMBP28068 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC3.84□□□□□ -1.79
HLA-DMBP28068 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC3.84□□□□□ -1.79
HLA-DMBP28068 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC3.84□□□□□ -1.79
HLA-DMBP28068 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC3.84□□□□□ -1.79
HLA-DMBP28068 RPSAP73-201ENST00000614820 330 ntBASIC3.84□□□□□ -1.79
HLA-DMBP28068 AC135068.12-201ENST00000637370 931 ntBASIC3.84□□□□□ -1.79
HLA-DMBP28068 OR52B5P-202ENST00000641118 1110 ntBASIC3.84□□□□□ -1.79
HLA-DMBP28068 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HLA-DMBP28068 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
HLA-DMBP28068 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC3.84□□□□□ -1.79
HLA-DMBP28068 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
HLA-DMBP28068 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
HLA-DMBP28068 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
HLA-DMBP28068 AL022393.1-201ENST00000625142 1677 ntBASIC3.84□□□□□ -1.8
HLA-DMBP28068 AL672167.1-205ENST00000641112 3080 ntBASIC3.84□□□□□ -1.8
HLA-DMBP28068 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
HLA-DMBP28068 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC3.83□□□□□ -1.8
HLA-DMBP28068 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
HLA-DMBP28068 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HLA-DMBP28068 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HLA-DMBP28068 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC3.83□□□□□ -1.8
HLA-DMBP28068 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
HLA-DMBP28068 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
HLA-DMBP28068 RPL23P2-201ENST00000320371 421 ntBASIC3.83□□□□□ -1.8
HLA-DMBP28068 RNU1-43P-201ENST00000365052 165 ntBASIC3.83□□□□□ -1.8
HLA-DMBP28068 UBBP2-201ENST00000376781 231 ntBASIC3.83□□□□□ -1.8
HLA-DMBP28068 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HLA-DMBP28068 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HLA-DMBP28068 AC007068.1-201ENST00000396690 844 ntBASIC3.83□□□□□ -1.8
HLA-DMBP28068 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC3.83□□□□□ -1.8
HLA-DMBP28068 AC093655.2-201ENST00000425735 631 ntBASIC3.83□□□□□ -1.8
HLA-DMBP28068 COX6CP13-201ENST00000428703 226 ntBASIC3.83□□□□□ -1.8
HLA-DMBP28068 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms