Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC5.97□□□□□ -1.45
COL5A3P25940 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.97□□□□□ -1.45
COL5A3P25940 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
COL5A3P25940 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL5A3P25940 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL5A3P25940 ZNF573-202ENST00000357309 2124 ntTSL 5 BASIC5.97□□□□□ -1.45
COL5A3P25940 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL5A3P25940 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL5A3P25940 RPL21P67-201ENST00000402896 478 ntBASIC5.97□□□□□ -1.45
COL5A3P25940 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC5.97□□□□□ -1.45
COL5A3P25940 AC122718.1-201ENST00000439448 744 ntBASIC5.97□□□□□ -1.45
COL5A3P25940 FAM133DP-201ENST00000464802 691 ntBASIC5.97□□□□□ -1.45
COL5A3P25940 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC5.97□□□□□ -1.45
COL5A3P25940 MTCO1P35-201ENST00000515270 228 ntBASIC5.97□□□□□ -1.45
COL5A3P25940 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC5.97□□□□□ -1.45
COL5A3P25940 SNORA74C-1-201ENST00000580726 201 ntBASIC5.97□□□□□ -1.45
COL5A3P25940 MIR4420-201ENST00000583944 77 ntBASIC5.97□□□□□ -1.45
COL5A3P25940 AL049536.1-201ENST00000625043 744 ntBASIC5.97□□□□□ -1.45
COL5A3P25940 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC5.97□□□□□ -1.45
COL5A3P25940 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL5A3P25940 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL5A3P25940 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL5A3P25940 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC5.97□□□□□ -1.45
COL5A3P25940 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC5.97□□□□□ -1.45
COL5A3P25940 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
COL5A3P25940 AC012213.2-201ENST00000562917 4597 ntBASIC5.97□□□□□ -1.45
COL5A3P25940 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL5A3P25940 AL117339.4-201ENST00000608335 7063 ntBASIC5.97□□□□□ -1.45
COL5A3P25940 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC5.97□□□□□ -1.45
COL5A3P25940 VN2R3P-201ENST00000422626 1412 ntBASIC5.97□□□□□ -1.45
COL5A3P25940 RPL23AP59-201ENST00000399415 461 ntBASIC5.96□□□□□ -1.45
COL5A3P25940 LINC01047-201ENST00000415193 778 ntTSL 5 BASIC5.96□□□□□ -1.45
COL5A3P25940 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.96□□□□□ -1.45
COL5A3P25940 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC5.96□□□□□ -1.45
COL5A3P25940 OR4C10P-201ENST00000434991 931 ntBASIC5.96□□□□□ -1.45
COL5A3P25940 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.96□□□□□ -1.45
COL5A3P25940 AC114755.5-201ENST00000447760 831 ntBASIC5.96□□□□□ -1.45
COL5A3P25940 IGHVIII-2-1-201ENST00000518843 291 ntBASIC5.96□□□□□ -1.45
COL5A3P25940 AC018558.5-201ENST00000565840 952 ntBASIC5.96□□□□□ -1.45
COL5A3P25940 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
COL5A3P25940 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC5.96□□□□□ -1.45
COL5A3P25940 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
COL5A3P25940 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.96□□□□□ -1.45
COL5A3P25940 NRK-204ENST00000540278 1687 ntTSL 2 BASIC5.96□□□□□ -1.45
COL5A3P25940 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
COL5A3P25940 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC5.96□□□□□ -1.45
COL5A3P25940 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
COL5A3P25940 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
COL5A3P25940 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
COL5A3P25940 PTER-201ENST00000298942 3448 ntTSL 5 BASIC5.96□□□□□ -1.46
COL5A3P25940 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.46
COL5A3P25940 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC5.96□□□□□ -1.46
COL5A3P25940 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.96□□□□□ -1.46
COL5A3P25940 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
COL5A3P25940 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC5.96□□□□□ -1.46
COL5A3P25940 RNU1-130P-201ENST00000363930 160 ntBASIC5.96□□□□□ -1.46
COL5A3P25940 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.96□□□□□ -1.46
COL5A3P25940 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
COL5A3P25940 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC5.96□□□□□ -1.46
COL5A3P25940 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC5.96□□□□□ -1.46
COL5A3P25940 AP003497.2-201ENST00000624220 967 ntBASIC5.96□□□□□ -1.46
COL5A3P25940 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC5.96□□□□□ -1.46
COL5A3P25940 AC090017.1-201ENST00000548612 1779 ntBASIC5.96□□□□□ -1.46
COL5A3P25940 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
COL5A3P25940 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.95□□□□□ -1.46
COL5A3P25940 AC104118.1-201ENST00000607625 1589 ntBASIC5.95□□□□□ -1.46
COL5A3P25940 AL731566.1-201ENST00000620490 1937 ntBASIC5.95□□□□□ -1.46
COL5A3P25940 MR1-209ENST00000617803 7584 ntTSL 5 BASIC5.95□□□□□ -1.46
COL5A3P25940 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC5.95□□□□□ -1.46
COL5A3P25940 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL5A3P25940 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.95□□□□□ -1.46
COL5A3P25940 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL5A3P25940 RNA5SP388-201ENST00000362584 119 ntBASIC5.95□□□□□ -1.46
COL5A3P25940 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC5.95□□□□□ -1.46
COL5A3P25940 AC021876.1-201ENST00000425959 359 ntBASIC5.95□□□□□ -1.46
COL5A3P25940 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC5.95□□□□□ -1.46
COL5A3P25940 AL162591.2-201ENST00000449634 317 ntBASIC5.95□□□□□ -1.46
COL5A3P25940 OR52E3P-201ENST00000452083 936 ntBASIC5.95□□□□□ -1.46
COL5A3P25940 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL5A3P25940 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC5.95□□□□□ -1.46
COL5A3P25940 OR7A19P-201ENST00000608051 733 ntBASIC5.95□□□□□ -1.46
COL5A3P25940 Z95327.3-201ENST00000610385 572 ntBASIC5.95□□□□□ -1.46
COL5A3P25940 AC024941.1-201ENST00000612250 334 ntBASIC5.95□□□□□ -1.46
COL5A3P25940 AL731532.1-201ENST00000623972 4236 ntBASIC5.95□□□□□ -1.46
COL5A3P25940 AC004690.2-201ENST00000472838 1754 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL5A3P25940 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
COL5A3P25940 DHX9P1-201ENST00000436565 3076 ntBASIC5.95□□□□□ -1.46
COL5A3P25940 MFSD8-220ENST00000641243 1422 ntBASIC5.95□□□□□ -1.46
COL5A3P25940 CARF-203ENST00000414439 2099 ntTSL 2 BASIC5.95□□□□□ -1.46
COL5A3P25940 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL5A3P25940 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC5.94□□□□□ -1.46
COL5A3P25940 AL022722.2-201ENST00000402519 180 ntBASIC5.94□□□□□ -1.46
COL5A3P25940 RPL23AP93-201ENST00000440847 484 ntBASIC5.94□□□□□ -1.46
COL5A3P25940 CDC27P1-201ENST00000445384 715 ntBASIC5.94□□□□□ -1.46
COL5A3P25940 EEF1A1P1-201ENST00000447052 739 ntBASIC5.94□□□□□ -1.46
COL5A3P25940 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
COL5A3P25940 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC5.94□□□□□ -1.46
COL5A3P25940 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC5.94□□□□□ -1.46
COL5A3P25940 AC091167.1-201ENST00000492017 396 ntBASIC5.94□□□□□ -1.46
COL5A3P25940 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC5.94□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms