Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 GLYCAM1-201ENST00000546596 285 ntBASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 ANKRD36BP2-206ENST00000575193 1245 ntBASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 LINC01855-201ENST00000585520 396 ntTSL 3 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 MIR7515HG-235ENST00000590865 918 ntTSL 5 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 AP003392.5-201ENST00000607857 415 ntBASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 AC026368.1-201ENST00000614934 690 ntBASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 AF246928.1-201ENST00000623768 87 ntBASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 AC016717.3-201ENST00000624730 554 ntBASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 MVP-219ENST00000629059 120 ntTSL 5 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 DRG1-207ENST00000629688 309 ntTSL 5 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 FP325313.1-201ENST00000638228 703 ntBASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 NCLP2-201ENST00000416078 1462 ntBASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 NSF-206ENST00000575068 2667 ntTSL 2 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 PPBPP2-201ENST00000513150 1362 ntBASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 EEF1A1P33-201ENST00000554413 1362 ntBASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 AC096921.2-201ENST00000561507 1916 ntBASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 CASC15-201ENST00000444265 1497 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 Y_RNA.70-201ENST00000362886 110 ntBASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 Y_RNA.472-201ENST00000384322 102 ntBASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 AC012519.1-201ENST00000424588 610 ntBASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 RPS18P1-201ENST00000447840 458 ntBASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 AC084754.1-201ENST00000463466 464 ntBASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 UCK2-205ENST00000469256 753 ntTSL 3 BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 RN7SL326P-201ENST00000477493 296 ntBASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 KRT19P6-201ENST00000510983 209 ntBASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 AP002963.1-201ENST00000530590 184 ntBASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 AP001317.1-201ENST00000531194 960 ntBASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 PDCL2P2-201ENST00000533651 189 ntBASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 DPPA2P4-201ENST00000563717 878 ntBASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 AC002400.1-201ENST00000569310 726 ntBASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 AC087683.1-201ENST00000591187 441 ntBASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 AC106791.2-201ENST00000604680 391 ntBASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 AC004890.3-201ENST00000605566 1095 ntBASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 AC007684.1-201ENST00000609671 477 ntBASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 AC005840.5-201ENST00000619166 599 ntBASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 OR5AK4P-201ENST00000635912 903 ntBASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 AL157700.1-201ENST00000561973 1432 ntBASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 AC109446.4-201ENST00000623235 2755 ntBASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
CCDC39Q9UFE4 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 ATP8A2P3-201ENST00000426792 1536 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 THAP12P8-201ENST00000447914 2115 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AL078595.2-201ENST00000605309 1780 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 MIR551B-201ENST00000384984 96 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AC003045.1-201ENST00000398779 713 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 ARL4AP5-201ENST00000404372 599 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 MIR548F1-201ENST00000408667 84 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AC245052.5-201ENST00000416320 649 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 USP9YP35-201ENST00000435696 412 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 FGF7P5-201ENST00000441829 291 ntBASIC7.06□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms