Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC3.36□□□□□ -1.87
PRKDCP78527 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC3.36□□□□□ -1.87
PRKDCP78527 ENAH-204ENST00000366844 13168 ntAPPRIS P4 TSL 1 (best) BASIC3.36□□□□□ -1.87
PRKDCP78527 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC3.36□□□□□ -1.87
PRKDCP78527 MIR34B-201ENST00000385076 84 ntBASIC3.36□□□□□ -1.87
PRKDCP78527 AL390316.1-201ENST00000406279 553 ntBASIC3.36□□□□□ -1.87
PRKDCP78527 TCEA1P4-201ENST00000415066 844 ntBASIC3.36□□□□□ -1.87
PRKDCP78527 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC3.36□□□□□ -1.87
PRKDCP78527 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.36□□□□□ -1.87
PRKDCP78527 AC091868.1-201ENST00000508746 304 ntBASIC3.36□□□□□ -1.87
PRKDCP78527 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.36□□□□□ -1.87
PRKDCP78527 OR7E10P-201ENST00000526420 991 ntBASIC3.36□□□□□ -1.87
PRKDCP78527 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC3.36□□□□□ -1.87
PRKDCP78527 AC005899.7-201ENST00000618199 588 ntBASIC3.36□□□□□ -1.87
PRKDCP78527 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
PRKDCP78527 MAPK8-205ENST00000374182 5638 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
PRKDCP78527 AC008758.3-201ENST00000507003 1829 ntBASIC3.36□□□□□ -1.87
PRKDCP78527 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
PRKDCP78527 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
PRKDCP78527 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
PRKDCP78527 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
PRKDCP78527 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC3.36□□□□□ -1.87
PRKDCP78527 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
PRKDCP78527 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.36□□□□□ -1.87
PRKDCP78527 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC3.36□□□□□ -1.87
PRKDCP78527 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.36□□□□□ -1.87
PRKDCP78527 AC116562.1-201ENST00000485355 781 ntBASIC3.36□□□□□ -1.87
PRKDCP78527 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC3.36□□□□□ -1.87
PRKDCP78527 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.36□□□□□ -1.87
PRKDCP78527 RN7SL600P-201ENST00000581811 299 ntBASIC3.36□□□□□ -1.87
PRKDCP78527 AC060780.2-201ENST00000589047 198 ntBASIC3.36□□□□□ -1.87
PRKDCP78527 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC3.36□□□□□ -1.87
PRKDCP78527 IYD-201ENST00000229447 7513 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
PRKDCP78527 TEP1-201ENST00000262715 10695 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
PRKDCP78527 SCAPER-202ENST00000324767 4707 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
PRKDCP78527 ZNF566-204ENST00000434377 5197 ntAPPRIS P3 TSL 2 BASIC3.36□□□□□ -1.87
PRKDCP78527 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
PRKDCP78527 SPATA31D4-201ENST00000419782 4787 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
PRKDCP78527 AC099654.3-201ENST00000447087 1546 ntBASIC3.36□□□□□ -1.87
PRKDCP78527 AP001002.1-201ENST00000625148 1513 ntBASIC3.36□□□□□ -1.87
PRKDCP78527 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
PRKDCP78527 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC3.36□□□□□ -1.87
PRKDCP78527 HMGN2P31-201ENST00000432430 273 ntBASIC3.36□□□□□ -1.87
PRKDCP78527 TAAR4P-201ENST00000454843 1039 ntBASIC3.36□□□□□ -1.87
PRKDCP78527 AC022133.1-201ENST00000490961 571 ntBASIC3.36□□□□□ -1.87
PRKDCP78527 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.36□□□□□ -1.87
PRKDCP78527 MIR7975-201ENST00000619350 68 ntBASIC3.36□□□□□ -1.87
PRKDCP78527 AC012314.7-201ENST00000619693 93 ntBASIC3.36□□□□□ -1.87
PRKDCP78527 U6.105-201ENST00000637379 88 ntBASIC3.36□□□□□ -1.87
PRKDCP78527 CTNND1-221ENST00000529873 5931 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
PRKDCP78527 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.36□□□□□ -1.87
PRKDCP78527 KCNMA1-212ENST00000406533 5639 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
PRKDCP78527 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC3.36□□□□□ -1.87
PRKDCP78527 LINC00649-203ENST00000427447 9124 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
PRKDCP78527 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
PRKDCP78527 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC3.35□□□□□ -1.87
PRKDCP78527 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC3.35□□□□□ -1.87
PRKDCP78527 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC3.35□□□□□ -1.87
PRKDCP78527 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC3.35□□□□□ -1.87
PRKDCP78527 MRRF-202ENST00000344641 9826 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
PRKDCP78527 AC092162.3-201ENST00000624511 1624 ntBASIC3.35□□□□□ -1.87
PRKDCP78527 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
PRKDCP78527 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC3.35□□□□□ -1.87
PRKDCP78527 NPM1P34-201ENST00000428821 893 ntBASIC3.35□□□□□ -1.87
PRKDCP78527 NFYAP1-201ENST00000431953 972 ntBASIC3.35□□□□□ -1.87
PRKDCP78527 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.35□□□□□ -1.87
PRKDCP78527 BX679664.2-201ENST00000439282 283 ntBASIC3.35□□□□□ -1.87
PRKDCP78527 NANOGP10-201ENST00000453325 895 ntBASIC3.35□□□□□ -1.87
PRKDCP78527 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.35□□□□□ -1.87
PRKDCP78527 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC3.35□□□□□ -1.87
PRKDCP78527 AC110768.1-201ENST00000509222 400 ntBASIC3.35□□□□□ -1.87
PRKDCP78527 AC023136.1-201ENST00000513093 1105 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
PRKDCP78527 AC079064.1-201ENST00000528365 362 ntBASIC3.35□□□□□ -1.87
PRKDCP78527 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC3.35□□□□□ -1.87
PRKDCP78527 RNU4-89P-201ENST00000607443 133 ntBASIC3.35□□□□□ -1.87
PRKDCP78527 MIR6839-201ENST00000620425 113 ntBASIC3.35□□□□□ -1.87
PRKDCP78527 AP003497.2-201ENST00000624220 967 ntBASIC3.35□□□□□ -1.87
PRKDCP78527 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
PRKDCP78527 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
PRKDCP78527 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
PRKDCP78527 AFAP1-AS1-201ENST00000608442 6795 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
PRKDCP78527 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC3.35□□□□□ -1.87
PRKDCP78527 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
PRKDCP78527 AC021146.4-201ENST00000309229 279 ntBASIC3.35□□□□□ -1.87
PRKDCP78527 AC096664.2-201ENST00000411843 406 ntBASIC3.35□□□□□ -1.87
PRKDCP78527 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
PRKDCP78527 AP000827.1-201ENST00000527814 258 ntBASIC3.35□□□□□ -1.87
PRKDCP78527 OR5BC1P-201ENST00000529327 739 ntBASIC3.35□□□□□ -1.87
PRKDCP78527 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC3.35□□□□□ -1.87
PRKDCP78527 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
PRKDCP78527 AC019206.1-201ENST00000621938 425 ntBASIC3.35□□□□□ -1.87
PRKDCP78527 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
PRKDCP78527 AL356121.2-201ENST00000624715 780 ntBASIC3.35□□□□□ -1.87
PRKDCP78527 CYFIP1-208ENST00000617928 6793 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
PRKDCP78527 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC3.35□□□□□ -1.87
PRKDCP78527 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
PRKDCP78527 MAPK10-349ENST00000641767 3661 ntBASIC3.35□□□□□ -1.87
PRKDCP78527 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
PRKDCP78527 AURKA-208ENST00000395915 2114 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
PRKDCP78527 AL158163.1-201ENST00000603915 1649 ntBASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 83.9 ms