Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.84□□□□□ -1.47
BDNFP23560 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC5.84□□□□□ -1.47
BDNFP23560 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC5.84□□□□□ -1.47
BDNFP23560 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC5.84□□□□□ -1.47
BDNFP23560 AC131238.1-201ENST00000617135 328 ntBASIC5.84□□□□□ -1.47
BDNFP23560 AC015726.3-201ENST00000624501 418 ntBASIC5.84□□□□□ -1.47
BDNFP23560 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.84□□□□□ -1.47
BDNFP23560 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
BDNFP23560 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC5.84□□□□□ -1.48
BDNFP23560 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
BDNFP23560 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
BDNFP23560 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
BDNFP23560 AC138907.8-201ENST00000623981 2256 ntBASIC5.83□□□□□ -1.48
BDNFP23560 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.83□□□□□ -1.48
BDNFP23560 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC5.83□□□□□ -1.48
BDNFP23560 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
BDNFP23560 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
BDNFP23560 CASC19-221ENST00000641309 1382 ntBASIC5.83□□□□□ -1.48
BDNFP23560 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
BDNFP23560 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC5.83□□□□□ -1.48
BDNFP23560 MTND4P31-201ENST00000425607 1343 ntBASIC5.83□□□□□ -1.48
BDNFP23560 OR4F13P-202ENST00000560066 2054 ntBASIC5.83□□□□□ -1.48
BDNFP23560 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
BDNFP23560 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
BDNFP23560 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
BDNFP23560 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
BDNFP23560 IGKV7-3-201ENST00000357453 298 ntBASIC5.83□□□□□ -1.48
BDNFP23560 Z68694.1-201ENST00000413929 841 ntBASIC5.83□□□□□ -1.48
BDNFP23560 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
BDNFP23560 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
BDNFP23560 RPS4XP16-201ENST00000427198 791 ntBASIC5.83□□□□□ -1.48
BDNFP23560 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC5.83□□□□□ -1.48
BDNFP23560 CYCSP6-201ENST00000434498 302 ntBASIC5.83□□□□□ -1.48
BDNFP23560 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC5.83□□□□□ -1.48
BDNFP23560 MTND2P3-201ENST00000452458 470 ntBASIC5.83□□□□□ -1.48
BDNFP23560 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC5.83□□□□□ -1.48
BDNFP23560 RPL7P45-201ENST00000455851 743 ntBASIC5.83□□□□□ -1.48
BDNFP23560 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.83□□□□□ -1.48
BDNFP23560 PGBD4P4-201ENST00000509673 613 ntBASIC5.83□□□□□ -1.48
BDNFP23560 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.83□□□□□ -1.48
BDNFP23560 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC5.83□□□□□ -1.48
BDNFP23560 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
BDNFP23560 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.83□□□□□ -1.48
BDNFP23560 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC5.83□□□□□ -1.48
BDNFP23560 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC5.83□□□□□ -1.48
BDNFP23560 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.83□□□□□ -1.48
BDNFP23560 AC084757.1-201ENST00000559987 490 ntBASIC5.83□□□□□ -1.48
BDNFP23560 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
BDNFP23560 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.83□□□□□ -1.48
BDNFP23560 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.83□□□□□ -1.48
BDNFP23560 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.83□□□□□ -1.48
BDNFP23560 H3F3BP2-201ENST00000583907 357 ntBASIC5.83□□□□□ -1.48
BDNFP23560 AC093388.1-201ENST00000609166 430 ntBASIC5.83□□□□□ -1.48
BDNFP23560 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
BDNFP23560 AC136428.4-201ENST00000634254 1155 ntBASIC5.83□□□□□ -1.48
BDNFP23560 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
BDNFP23560 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
BDNFP23560 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
BDNFP23560 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC5.83□□□□□ -1.48
BDNFP23560 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
BDNFP23560 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
BDNFP23560 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
BDNFP23560 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
BDNFP23560 AL592437.2-201ENST00000421655 2434 ntBASIC5.83□□□□□ -1.48
BDNFP23560 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
BDNFP23560 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
BDNFP23560 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.82□□□□□ -1.48
BDNFP23560 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
BDNFP23560 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
BDNFP23560 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
BDNFP23560 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
BDNFP23560 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
BDNFP23560 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
BDNFP23560 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.82□□□□□ -1.48
BDNFP23560 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
BDNFP23560 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
BDNFP23560 TAF9BP2-201ENST00000400856 499 ntBASIC5.82□□□□□ -1.48
BDNFP23560 TANK-203ENST00000402568 878 ntTSL 5 BASIC5.82□□□□□ -1.48
BDNFP23560 HMGB1P13-201ENST00000406019 642 ntBASIC5.82□□□□□ -1.48
BDNFP23560 MIR1178-201ENST00000408396 91 ntBASIC5.82□□□□□ -1.48
BDNFP23560 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.82□□□□□ -1.48
BDNFP23560 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
BDNFP23560 AL355433.1-201ENST00000422804 300 ntBASIC5.82□□□□□ -1.48
BDNFP23560 OR10T1P-201ENST00000424327 947 ntBASIC5.82□□□□□ -1.48
BDNFP23560 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC5.82□□□□□ -1.48
BDNFP23560 ZFAND6P1-201ENST00000434138 605 ntBASIC5.82□□□□□ -1.48
BDNFP23560 XKRY2-201ENST00000442362 1093 ntBASIC5.82□□□□□ -1.48
BDNFP23560 AC007000.2-201ENST00000442564 487 ntBASIC5.82□□□□□ -1.48
BDNFP23560 IFNWP4-201ENST00000453148 294 ntBASIC5.82□□□□□ -1.48
BDNFP23560 AC006511.1-201ENST00000470614 315 ntBASIC5.82□□□□□ -1.48
BDNFP23560 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.82□□□□□ -1.48
BDNFP23560 OR2AO1P-201ENST00000476497 403 ntBASIC5.82□□□□□ -1.48
BDNFP23560 AC090058.1-201ENST00000498788 435 ntBASIC5.82□□□□□ -1.48
BDNFP23560 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC5.82□□□□□ -1.48
BDNFP23560 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC5.82□□□□□ -1.48
BDNFP23560 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.82□□□□□ -1.48
BDNFP23560 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC5.82□□□□□ -1.48
BDNFP23560 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC5.82□□□□□ -1.48
BDNFP23560 OR5AM1P-201ENST00000532136 1032 ntBASIC5.82□□□□□ -1.48
BDNFP23560 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms