Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC5.51□□□□□ -1.53
CLDN3O15551 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.51□□□□□ -1.53
CLDN3O15551 RHOT1P3-201ENST00000436571 331 ntBASIC5.51□□□□□ -1.53
CLDN3O15551 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC5.51□□□□□ -1.53
CLDN3O15551 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.51□□□□□ -1.53
CLDN3O15551 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC5.51□□□□□ -1.53
CLDN3O15551 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.51□□□□□ -1.53
CLDN3O15551 IGHV5-78-201ENST00000450948 295 ntBASIC5.51□□□□□ -1.53
CLDN3O15551 RN7SL441P-201ENST00000492388 296 ntBASIC5.51□□□□□ -1.53
CLDN3O15551 ENPP7P11-201ENST00000505915 627 ntBASIC5.51□□□□□ -1.53
CLDN3O15551 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CLDN3O15551 RNA5SP43-201ENST00000516559 110 ntBASIC5.51□□□□□ -1.53
CLDN3O15551 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.51□□□□□ -1.53
CLDN3O15551 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC5.51□□□□□ -1.53
CLDN3O15551 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC5.51□□□□□ -1.53
CLDN3O15551 NDUFB4P11-201ENST00000560510 395 ntBASIC5.51□□□□□ -1.53
CLDN3O15551 AC133644.2-201ENST00000608142 540 ntBASIC5.51□□□□□ -1.53
CLDN3O15551 AP005212.4-201ENST00000614206 710 ntBASIC5.51□□□□□ -1.53
CLDN3O15551 AC091905.4-201ENST00000623432 202 ntBASIC5.51□□□□□ -1.53
CLDN3O15551 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.51□□□□□ -1.53
CLDN3O15551 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC5.51□□□□□ -1.53
CLDN3O15551 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CLDN3O15551 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CLDN3O15551 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.51□□□□□ -1.53
CLDN3O15551 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CLDN3O15551 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
CLDN3O15551 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CLDN3O15551 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CLDN3O15551 AC131971.1-201ENST00000332881 1482 ntBASIC5.51□□□□□ -1.53
CLDN3O15551 AC007996.1-201ENST00000620414 2821 ntBASIC5.51□□□□□ -1.53
CLDN3O15551 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.51□□□□□ -1.53
CLDN3O15551 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
CLDN3O15551 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.5□□□□□ -1.53
CLDN3O15551 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC5.5□□□□□ -1.53
CLDN3O15551 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.5□□□□□ -1.53
CLDN3O15551 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CLDN3O15551 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CLDN3O15551 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CLDN3O15551 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.5□□□□□ -1.53
CLDN3O15551 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
CLDN3O15551 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
CLDN3O15551 RNA5SP123-201ENST00000363244 119 ntBASIC5.5□□□□□ -1.53
CLDN3O15551 RNA5SP428-201ENST00000365129 132 ntBASIC5.5□□□□□ -1.53
CLDN3O15551 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CLDN3O15551 SNORA77-201ENST00000408716 125 ntBASIC5.5□□□□□ -1.53
CLDN3O15551 RAB9AP4-201ENST00000415230 609 ntBASIC5.5□□□□□ -1.53
CLDN3O15551 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CLDN3O15551 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC5.5□□□□□ -1.53
CLDN3O15551 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC5.5□□□□□ -1.53
CLDN3O15551 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC5.5□□□□□ -1.53
CLDN3O15551 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC5.5□□□□□ -1.53
CLDN3O15551 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC5.5□□□□□ -1.53
CLDN3O15551 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC5.5□□□□□ -1.53
CLDN3O15551 TCEA1P3-201ENST00000443005 880 ntBASIC5.5□□□□□ -1.53
CLDN3O15551 TCEA1P1-201ENST00000449716 880 ntBASIC5.5□□□□□ -1.53
CLDN3O15551 snoU13.20-201ENST00000459180 104 ntBASIC5.5□□□□□ -1.53
CLDN3O15551 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.5□□□□□ -1.53
CLDN3O15551 AC110775.1-201ENST00000513721 462 ntBASIC5.5□□□□□ -1.53
CLDN3O15551 AP000676.2-201ENST00000529711 301 ntBASIC5.5□□□□□ -1.53
CLDN3O15551 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC5.5□□□□□ -1.53
CLDN3O15551 AC125612.1-201ENST00000547580 377 ntBASIC5.5□□□□□ -1.53
CLDN3O15551 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC5.5□□□□□ -1.53
CLDN3O15551 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.5□□□□□ -1.53
CLDN3O15551 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC5.5□□□□□ -1.53
CLDN3O15551 MYLK-221ENST00000583087 678 ntTSL 4 BASIC5.5□□□□□ -1.53
CLDN3O15551 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC5.5□□□□□ -1.53
CLDN3O15551 AC010615.3-201ENST00000597319 394 ntBASIC5.5□□□□□ -1.53
CLDN3O15551 AC018695.5-201ENST00000605872 315 ntBASIC5.5□□□□□ -1.53
CLDN3O15551 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC5.5□□□□□ -1.53
CLDN3O15551 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC5.5□□□□□ -1.53
CLDN3O15551 ZNRD1ASP-221ENST00000637794 1074 ntBASIC5.5□□□□□ -1.53
CLDN3O15551 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CLDN3O15551 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CLDN3O15551 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.5□□□□□ -1.53
CLDN3O15551 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CLDN3O15551 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
CLDN3O15551 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CLDN3O15551 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
CLDN3O15551 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CLDN3O15551 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.49□□□□□ -1.53
CLDN3O15551 AC063976.2-201ENST00000425667 3556 ntBASIC5.49□□□□□ -1.53
CLDN3O15551 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CLDN3O15551 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CLDN3O15551 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CLDN3O15551 RN7SKP16-201ENST00000410180 299 ntBASIC5.49□□□□□ -1.53
CLDN3O15551 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC5.49□□□□□ -1.53
CLDN3O15551 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC5.49□□□□□ -1.53
CLDN3O15551 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC5.49□□□□□ -1.53
CLDN3O15551 AC006455.6-201ENST00000426192 893 ntBASIC5.49□□□□□ -1.53
CLDN3O15551 VN1R54P-201ENST00000435210 1049 ntBASIC5.49□□□□□ -1.53
CLDN3O15551 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.49□□□□□ -1.53
CLDN3O15551 AL137845.2-201ENST00000444292 988 ntBASIC5.49□□□□□ -1.53
CLDN3O15551 MTCYBP14-201ENST00000457471 715 ntBASIC5.49□□□□□ -1.53
CLDN3O15551 RN7SL319P-201ENST00000480656 221 ntBASIC5.49□□□□□ -1.53
CLDN3O15551 AC140172.1-201ENST00000502928 141 ntBASIC5.49□□□□□ -1.53
CLDN3O15551 NDUFB5P1-201ENST00000508134 564 ntBASIC5.49□□□□□ -1.53
CLDN3O15551 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC5.49□□□□□ -1.53
CLDN3O15551 RN7SKP34-201ENST00000516142 244 ntBASIC5.49□□□□□ -1.53
CLDN3O15551 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC5.49□□□□□ -1.53
CLDN3O15551 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 122.8 ms