Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 ATF2-203ENST00000392544 1919 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 PDE7A-202ENST00000396642 2986 ntTSL 2 BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 ATP8A2P2-201ENST00000437678 1568 ntBASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 PPP6C-201ENST00000373547 4118 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 COL6A4P1-202ENST00000487147 4317 ntBASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 SLC8A3-208ENST00000533541 3409 ntTSL 2 BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 BCLAF1-223ENST00000628517 2512 ntTSL 5 BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 IQGAP1-201ENST00000268182 7233 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 ZNFX1-202ENST00000371752 7212 ntAPPRIS P1 TSL 5 BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 GRAMD2B-212ENST00000513040 2196 ntTSL 2 BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 CD86-202ENST00000330540 2708 ntAPPRIS P3 TSL 1 (best) BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 OR9K1P-201ENST00000326513 941 ntBASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 RNA5SP238-201ENST00000365464 120 ntBASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 CARD17-201ENST00000375707 466 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 RNU1-149P-201ENST00000390870 161 ntBASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 ATP5E-203ENST00000395663 697 ntAPPRIS P1 TSL 2 BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 FGFR1OP2P1-201ENST00000395943 500 ntBASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 LL22NC01-81G9.3-201ENST00000400221 992 ntTSL 2 BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 RN7SKP32-201ENST00000410167 303 ntBASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 AL353193.1-201ENST00000421444 268 ntBASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 AC023347.2-201ENST00000433994 462 ntBASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 LINC01525-201ENST00000442182 511 ntTSL 2 BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 AL845321.1-201ENST00000444603 348 ntBASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 AL136380.1-201ENST00000447970 162 ntBASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 AL031736.1-201ENST00000449688 618 ntBASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 AL121877.1-201ENST00000453704 622 ntBASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 CXCR6-203ENST00000457814 1184 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 RN7SL868P-201ENST00000485915 303 ntBASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 AL137230.1-202ENST00000553996 420 ntTSL 2 BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 PSMA3P-201ENST00000555485 635 ntBASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 AP3S2-214ENST00000560940 519 ntTSL 5 BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 AC055876.1-202ENST00000567053 138 ntBASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 AC016629.2-201ENST00000597341 199 ntBASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 AC015819.1-201ENST00000613588 663 ntBASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 AC244196.1-201ENST00000620569 409 ntAPPRIS P1 BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 AC211433.3-201ENST00000623770 375 ntBASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 CDRT1-208ENST00000630868 794 ntBASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 AC099654.6-201ENST00000636487 512 ntBASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 AC138649.5-201ENST00000637456 137 ntBASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 MTND5P42-201ENST00000637720 498 ntBASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 FBXO36-202ENST00000373652 3120 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 FOPNL-206ENST00000573968 2039 ntTSL 2 BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 MIR17HG-202ENST00000581816 2032 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 MEPE-204ENST00000497649 2226 ntAPPRIS ALT2 TSL 5 BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 PRKAR2A-AS1-202ENST00000416209 3447 ntTSL 2 BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 AP000473.2-201ENST00000602659 1537 ntBASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 ARMCX3-207ENST00000537169 3318 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 DZANK1-203ENST00000357236 3739 ntAPPRIS ALT2 TSL 5 BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 CENPL-203ENST00000367710 1771 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
LIMD1Q9UGP4 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC7.71□□□□□ -1.17
LIMD1Q9UGP4 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC7.71□□□□□ -1.17
LIMD1Q9UGP4 ADGRF2-204ENST00000507065 3043 ntTSL 5 BASIC7.71□□□□□ -1.17
LIMD1Q9UGP4 SLC39A12-203ENST00000377374 2639 ntAPPRIS P3 TSL 2 BASIC7.71□□□□□ -1.17
LIMD1Q9UGP4 CHURC1-203ENST00000549115 2629 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
LIMD1Q9UGP4 SEM1-215ENST00000615352 2637 ntTSL 5 BASIC7.71□□□□□ -1.17
LIMD1Q9UGP4 SUN3-201ENST00000297325 1416 ntAPPRIS P1 TSL 5 BASIC7.71□□□□□ -1.17
LIMD1Q9UGP4 CORO1C-202ENST00000420959 3921 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
LIMD1Q9UGP4 CD101-202ENST00000369470 3324 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
LIMD1Q9UGP4 AC112719.2-201ENST00000501239 1685 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 SCG5-201ENST00000300175 1238 ntAPPRIS P4 TSL 1 (best) BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 OR52H1-201ENST00000322653 1057 ntAPPRIS P1 BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 RNU1-39P-201ENST00000383897 165 ntBASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 FAUP2-201ENST00000394301 401 ntBASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 MRPL42P2-201ENST00000403169 426 ntBASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 HMGB1P17-201ENST00000403495 628 ntBASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 AC073115.2-201ENST00000416708 555 ntTSL 4 BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 AC092042.2-201ENST00000417304 331 ntBASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 RPS7P8-201ENST00000418311 581 ntBASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 DYNLL1P7-201ENST00000429273 258 ntBASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 AC073900.1-201ENST00000429766 776 ntBASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 AC004470.1-201ENST00000442155 382 ntTSL 5 BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 CBWD4P-201ENST00000445695 655 ntBASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 HIGD1AP8-201ENST00000453927 274 ntBASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 AC234771.3-201ENST00000454984 622 ntBASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 RN7SL168P-201ENST00000463821 279 ntBASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 AC015820.1-201ENST00000473882 321 ntBASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 PPP4R2-207ENST00000495566 559 ntTSL 3 BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 SCARNA18.2-201ENST00000516882 84 ntBASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 NACA-211ENST00000548563 827 ntTSL 5 BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC7.71□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms