Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 AC005033.1-201ENST00000428904 813 ntBASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 AURKAPS1-201ENST00000451805 1212 ntBASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 AC023424.1-201ENST00000496058 459 ntBASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 LDHBP3-201ENST00000514909 822 ntBASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 AC026688.1-201ENST00000520639 1168 ntBASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 CYCSP40-201ENST00000575927 294 ntBASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 MIR1269B-201ENST00000580405 75 ntBASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 MIR4472-2-201ENST00000582069 67 ntBASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 RN7SL435P-201ENST00000584418 282 ntBASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 TAS2R6P-201ENST00000605022 826 ntBASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 AC243960.7-201ENST00000623532 707 ntBASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 AC087821.1-201ENST00000623639 567 ntBASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 AC132825.8-201ENST00000640783 297 ntBASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 CDC27P2-201ENST00000425026 1922 ntBASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 STX3-208ENST00000641815 3236 ntBASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS29Q9UBQ0 DDX18P5-201ENST00000534547 1306 ntBASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 AC005522.1-201ENST00000395416 346 ntBASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 NPM1P40-201ENST00000412758 733 ntBASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 AC016724.1-201ENST00000453215 421 ntBASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 RPL5P22-201ENST00000480199 884 ntBASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 AC090686.1-201ENST00000481577 749 ntBASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 AC092490.3-201ENST00000545370 572 ntBASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 AC068993.1-201ENST00000546724 589 ntBASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 AL390334.1-201ENST00000556395 450 ntBASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 AL731566.1-201ENST00000620490 1937 ntBASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 SAMMSON-213ENST00000641336 1521 ntBASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 AC009643.2-201ENST00000603543 1448 ntBASIC4.72□□□□□ -1.65
VPS29Q9UBQ0 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
VPS29Q9UBQ0 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC4.71□□□□□ -1.65
VPS29Q9UBQ0 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
VPS29Q9UBQ0 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.71□□□□□ -1.66
VPS29Q9UBQ0 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.71□□□□□ -1.66
VPS29Q9UBQ0 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC4.71□□□□□ -1.66
VPS29Q9UBQ0 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.71□□□□□ -1.66
VPS29Q9UBQ0 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.71□□□□□ -1.66
VPS29Q9UBQ0 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.66
VPS29Q9UBQ0 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
VPS29Q9UBQ0 RPL23P2-201ENST00000320371 421 ntBASIC4.71□□□□□ -1.66
VPS29Q9UBQ0 RNA5SP455-201ENST00000365190 119 ntBASIC4.71□□□□□ -1.66
VPS29Q9UBQ0 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
VPS29Q9UBQ0 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
VPS29Q9UBQ0 AL078599.1-201ENST00000402075 293 ntBASIC4.71□□□□□ -1.66
VPS29Q9UBQ0 AL021331.1-201ENST00000402817 582 ntBASIC4.71□□□□□ -1.66
VPS29Q9UBQ0 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC4.71□□□□□ -1.66
VPS29Q9UBQ0 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC4.71□□□□□ -1.66
VPS29Q9UBQ0 AL136455.1-201ENST00000441083 1240 ntBASIC4.71□□□□□ -1.66
VPS29Q9UBQ0 AL137845.2-201ENST00000444292 988 ntBASIC4.71□□□□□ -1.66
VPS29Q9UBQ0 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS29Q9UBQ0 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS29Q9UBQ0 DAP3-209ENST00000465375 729 ntTSL 2 BASIC4.71□□□□□ -1.66
VPS29Q9UBQ0 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS29Q9UBQ0 AC090114.3-201ENST00000479267 829 ntBASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms