Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 EEF1B2P6-201ENST00000445713 673 ntBASIC4.65□□□□□ -1.67
NKX3-1Q99801 RN7SL72P-201ENST00000460697 269 ntBASIC4.65□□□□□ -1.67
NKX3-1Q99801 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 AC074386.1-201ENST00000476560 767 ntBASIC4.65□□□□□ -1.67
NKX3-1Q99801 RPL15P21-201ENST00000495592 567 ntBASIC4.65□□□□□ -1.67
NKX3-1Q99801 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 RNU6-615P-201ENST00000516065 106 ntBASIC4.65□□□□□ -1.67
NKX3-1Q99801 RN7SKP34-201ENST00000516142 244 ntBASIC4.65□□□□□ -1.67
NKX3-1Q99801 SNORA43.3-201ENST00000517240 103 ntBASIC4.65□□□□□ -1.67
NKX3-1Q99801 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 AP004607.2-201ENST00000533949 322 ntBASIC4.65□□□□□ -1.67
NKX3-1Q99801 RERGL-202ENST00000536890 367 ntTSL 3 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 AC022404.1-201ENST00000555320 273 ntBASIC4.65□□□□□ -1.67
NKX3-1Q99801 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 HCG18-243ENST00000602498 327 ntTSL 3 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 MTCO3P22-201ENST00000603219 784 ntBASIC4.65□□□□□ -1.67
NKX3-1Q99801 AC144521.1-201ENST00000607148 956 ntBASIC4.65□□□□□ -1.67
NKX3-1Q99801 AC006249.1-201ENST00000621223 471 ntBASIC4.65□□□□□ -1.67
NKX3-1Q99801 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
NKX3-1Q99801 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
NKX3-1Q99801 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
NKX3-1Q99801 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
NKX3-1Q99801 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC4.64□□□□□ -1.67
NKX3-1Q99801 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC4.64□□□□□ -1.67
NKX3-1Q99801 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
NKX3-1Q99801 PPCS-201ENST00000372556 984 ntTSL 2 BASIC4.64□□□□□ -1.67
NKX3-1Q99801 SDHDP6-201ENST00000414693 480 ntBASIC4.64□□□□□ -1.67
NKX3-1Q99801 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC4.64□□□□□ -1.67
NKX3-1Q99801 GTF3AP1-201ENST00000416942 1004 ntBASIC4.64□□□□□ -1.67
NKX3-1Q99801 AC234781.4-201ENST00000419384 244 ntBASIC4.64□□□□□ -1.67
NKX3-1Q99801 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC4.64□□□□□ -1.67
NKX3-1Q99801 CHEK2P5-201ENST00000423877 246 ntBASIC4.64□□□□□ -1.67
NKX3-1Q99801 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC4.64□□□□□ -1.67
NKX3-1Q99801 AL138787.1-202ENST00000437804 898 ntBASIC4.64□□□□□ -1.67
NKX3-1Q99801 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC4.64□□□□□ -1.67
NKX3-1Q99801 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC4.64□□□□□ -1.67
NKX3-1Q99801 AL035090.1-201ENST00000454835 332 ntBASIC4.64□□□□□ -1.67
NKX3-1Q99801 MYL12BP2-201ENST00000503948 512 ntBASIC4.64□□□□□ -1.67
NKX3-1Q99801 AC093763.2-201ENST00000505334 1223 ntBASIC4.64□□□□□ -1.67
NKX3-1Q99801 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC4.64□□□□□ -1.67
NKX3-1Q99801 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC4.64□□□□□ -1.67
NKX3-1Q99801 AC034244.2-201ENST00000514668 858 ntBASIC4.64□□□□□ -1.67
NKX3-1Q99801 AC027369.5-201ENST00000533838 755 ntBASIC4.64□□□□□ -1.67
NKX3-1Q99801 AC006518.1-201ENST00000541449 943 ntBASIC4.64□□□□□ -1.67
NKX3-1Q99801 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC4.64□□□□□ -1.67
NKX3-1Q99801 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC4.64□□□□□ -1.67
NKX3-1Q99801 SNORD95-201ENST00000579879 68 ntBASIC4.64□□□□□ -1.67
NKX3-1Q99801 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC4.64□□□□□ -1.67
NKX3-1Q99801 PPATP2-201ENST00000605635 508 ntBASIC4.64□□□□□ -1.67
NKX3-1Q99801 AL163051.2-201ENST00000618976 735 ntBASIC4.64□□□□□ -1.67
NKX3-1Q99801 AC095038.2-201ENST00000621464 1070 ntBASIC4.64□□□□□ -1.67
NKX3-1Q99801 AC091932.2-201ENST00000623014 291 ntBASIC4.64□□□□□ -1.67
NKX3-1Q99801 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC4.64□□□□□ -1.67
NKX3-1Q99801 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
NKX3-1Q99801 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
NKX3-1Q99801 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
NKX3-1Q99801 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
NKX3-1Q99801 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
NKX3-1Q99801 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
NKX3-1Q99801 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
NKX3-1Q99801 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC4.64□□□□□ -1.67
NKX3-1Q99801 USP45-204ENST00000369233 2514 ntTSL 5 BASIC4.64□□□□□ -1.67
NKX3-1Q99801 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
NKX3-1Q99801 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC4.63□□□□□ -1.67
NKX3-1Q99801 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
NKX3-1Q99801 AC092376.2-201ENST00000622621 4116 ntBASIC4.63□□□□□ -1.67
NKX3-1Q99801 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
NKX3-1Q99801 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
NKX3-1Q99801 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
NKX3-1Q99801 AP000542.2-201ENST00000623199 6179 ntBASIC4.63□□□□□ -1.67
NKX3-1Q99801 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
NKX3-1Q99801 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
NKX3-1Q99801 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
NKX3-1Q99801 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 OR4K12P-201ENST00000406538 961 ntBASIC4.63□□□□□ -1.67
NKX3-1Q99801 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 MARK2P12-201ENST00000420129 585 ntBASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms