Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
USP41Q3LFD5 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC5.64□□□□□ -1.51
USP41Q3LFD5 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
USP41Q3LFD5 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
USP41Q3LFD5 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
USP41Q3LFD5 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.64□□□□□ -1.51
USP41Q3LFD5 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
USP41Q3LFD5 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
USP41Q3LFD5 RN7SKP103-201ENST00000363848 320 ntBASIC5.64□□□□□ -1.51
USP41Q3LFD5 GPS2P1-201ENST00000411761 986 ntBASIC5.64□□□□□ -1.51
USP41Q3LFD5 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC5.64□□□□□ -1.51
USP41Q3LFD5 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC5.64□□□□□ -1.51
USP41Q3LFD5 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
USP41Q3LFD5 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.64□□□□□ -1.51
USP41Q3LFD5 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
USP41Q3LFD5 AL353718.1-201ENST00000451028 517 ntBASIC5.64□□□□□ -1.51
USP41Q3LFD5 HIGD1AP8-201ENST00000453927 274 ntBASIC5.64□□□□□ -1.51
USP41Q3LFD5 DNAJB5P1-201ENST00000454004 806 ntBASIC5.64□□□□□ -1.51
USP41Q3LFD5 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.64□□□□□ -1.51
USP41Q3LFD5 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC5.64□□□□□ -1.51
USP41Q3LFD5 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
USP41Q3LFD5 MTND3P24-201ENST00000506306 329 ntBASIC5.64□□□□□ -1.51
USP41Q3LFD5 AC008628.1-201ENST00000508663 265 ntBASIC5.64□□□□□ -1.51
USP41Q3LFD5 AC108157.1-201ENST00000510511 539 ntBASIC5.64□□□□□ -1.51
USP41Q3LFD5 AC004980.4-201ENST00000513375 203 ntBASIC5.64□□□□□ -1.51
USP41Q3LFD5 AC110775.1-201ENST00000513721 462 ntBASIC5.64□□□□□ -1.51
USP41Q3LFD5 RFPL4AP3-201ENST00000515267 345 ntBASIC5.64□□□□□ -1.51
USP41Q3LFD5 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.64□□□□□ -1.51
USP41Q3LFD5 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC5.64□□□□□ -1.51
USP41Q3LFD5 AC012400.1-201ENST00000518452 381 ntBASIC5.64□□□□□ -1.51
USP41Q3LFD5 AP001284.1-201ENST00000528393 2118 ntBASIC5.64□□□□□ -1.51
USP41Q3LFD5 OR8G3P-201ENST00000533406 921 ntBASIC5.64□□□□□ -1.51
USP41Q3LFD5 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.64□□□□□ -1.51
USP41Q3LFD5 MTND4LP25-201ENST00000570218 163 ntBASIC5.64□□□□□ -1.51
USP41Q3LFD5 AC011840.5-201ENST00000582125 771 ntBASIC5.64□□□□□ -1.51
USP41Q3LFD5 AC009237.13-201ENST00000603193 276 ntBASIC5.64□□□□□ -1.51
USP41Q3LFD5 AC009027.1-201ENST00000604510 479 ntBASIC5.64□□□□□ -1.51
USP41Q3LFD5 AC012213.4-201ENST00000606457 354 ntBASIC5.64□□□□□ -1.51
USP41Q3LFD5 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC5.64□□□□□ -1.51
USP41Q3LFD5 AL158211.2-201ENST00000607282 395 ntBASIC5.64□□□□□ -1.51
USP41Q3LFD5 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
USP41Q3LFD5 AL512506.1-201ENST00000613918 449 ntBASIC5.64□□□□□ -1.51
USP41Q3LFD5 AL353662.3-201ENST00000625131 237 ntBASIC5.64□□□□□ -1.51
USP41Q3LFD5 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC5.64□□□□□ -1.51
USP41Q3LFD5 TEX41-254ENST00000626394 423 ntTSL 5 BASIC5.64□□□□□ -1.51
USP41Q3LFD5 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.64□□□□□ -1.51
USP41Q3LFD5 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
USP41Q3LFD5 AC004656.1-201ENST00000568479 4951 ntBASIC5.64□□□□□ -1.51
USP41Q3LFD5 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
USP41Q3LFD5 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
USP41Q3LFD5 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
USP41Q3LFD5 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.64□□□□□ -1.51
USP41Q3LFD5 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
USP41Q3LFD5 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.64□□□□□ -1.51
USP41Q3LFD5 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
USP41Q3LFD5 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.63□□□□□ -1.51
USP41Q3LFD5 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.63□□□□□ -1.51
USP41Q3LFD5 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
USP41Q3LFD5 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC5.63□□□□□ -1.51
USP41Q3LFD5 THAP12P4-201ENST00000528321 2266 ntBASIC5.63□□□□□ -1.51
USP41Q3LFD5 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
USP41Q3LFD5 HSPA8P14-201ENST00000552265 1805 ntBASIC5.63□□□□□ -1.51
USP41Q3LFD5 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
USP41Q3LFD5 RNA5SP443-201ENST00000363083 132 ntBASIC5.63□□□□□ -1.51
USP41Q3LFD5 RNU1-146P-201ENST00000364015 165 ntBASIC5.63□□□□□ -1.51
USP41Q3LFD5 NUDT19P3-201ENST00000404698 555 ntBASIC5.63□□□□□ -1.51
USP41Q3LFD5 RPL37P18-201ENST00000411602 243 ntBASIC5.63□□□□□ -1.51
USP41Q3LFD5 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC5.63□□□□□ -1.51
USP41Q3LFD5 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC5.63□□□□□ -1.51
USP41Q3LFD5 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
USP41Q3LFD5 PA2G4P6-201ENST00000438325 1197 ntBASIC5.63□□□□□ -1.51
USP41Q3LFD5 AC006466.1-201ENST00000438721 289 ntBASIC5.63□□□□□ -1.51
USP41Q3LFD5 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.63□□□□□ -1.51
USP41Q3LFD5 AC073465.2-201ENST00000440938 498 ntBASIC5.63□□□□□ -1.51
USP41Q3LFD5 AC092647.2-201ENST00000452998 253 ntBASIC5.63□□□□□ -1.51
USP41Q3LFD5 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC5.63□□□□□ -1.51
USP41Q3LFD5 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC5.63□□□□□ -1.51
USP41Q3LFD5 AC079168.1-201ENST00000458741 345 ntBASIC5.63□□□□□ -1.51
USP41Q3LFD5 AC104629.2-201ENST00000468627 598 ntBASIC5.63□□□□□ -1.51
USP41Q3LFD5 AC097484.1-201ENST00000471148 389 ntBASIC5.63□□□□□ -1.51
USP41Q3LFD5 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC5.63□□□□□ -1.51
USP41Q3LFD5 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC5.63□□□□□ -1.51
USP41Q3LFD5 AC025768.1-201ENST00000510057 267 ntBASIC5.63□□□□□ -1.51
USP41Q3LFD5 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.63□□□□□ -1.51
USP41Q3LFD5 AP002373.2-201ENST00000541631 1060 ntBASIC5.63□□□□□ -1.51
USP41Q3LFD5 AL121839.1-201ENST00000556233 1185 ntBASIC5.63□□□□□ -1.51
USP41Q3LFD5 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
USP41Q3LFD5 AC009852.2-201ENST00000567898 485 ntBASIC5.63□□□□□ -1.51
USP41Q3LFD5 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.63□□□□□ -1.51
USP41Q3LFD5 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.63□□□□□ -1.51
USP41Q3LFD5 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC5.63□□□□□ -1.51
USP41Q3LFD5 AC135803.1-201ENST00000608748 565 ntBASIC5.63□□□□□ -1.51
USP41Q3LFD5 EIF3FP1-201ENST00000613970 806 ntBASIC5.63□□□□□ -1.51
USP41Q3LFD5 MIR6133-201ENST00000617057 108 ntBASIC5.63□□□□□ -1.51
USP41Q3LFD5 AL445528.2-201ENST00000620582 470 ntBASIC5.63□□□□□ -1.51
USP41Q3LFD5 AC073342.3-201ENST00000624211 193 ntBASIC5.63□□□□□ -1.51
USP41Q3LFD5 AL138960.2-201ENST00000625145 535 ntBASIC5.63□□□□□ -1.51
USP41Q3LFD5 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
USP41Q3LFD5 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.63□□□□□ -1.51
USP41Q3LFD5 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms