Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC069061.3-201ENST00000582254 823 ntBASIC5.92□□□□□ -1.46
BRCA1P38398 AC090948.1-201ENST00000607464 549 ntBASIC5.92□□□□□ -1.46
BRCA1P38398 RNA5SP196-201ENST00000625967 102 ntBASIC5.92□□□□□ -1.46
BRCA1P38398 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
BRCA1P38398 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
BRCA1P38398 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
BRCA1P38398 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC5.92□□□□□ -1.46
BRCA1P38398 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
BRCA1P38398 MAPK10-270ENST00000641102 3538 ntBASIC5.92□□□□□ -1.46
BRCA1P38398 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.92□□□□□ -1.46
BRCA1P38398 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
BRCA1P38398 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
BRCA1P38398 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
BRCA1P38398 SNORA11F-201ENST00000408237 128 ntBASIC5.92□□□□□ -1.46
BRCA1P38398 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC5.92□□□□□ -1.46
BRCA1P38398 RPL19P16-201ENST00000433839 588 ntBASIC5.92□□□□□ -1.46
BRCA1P38398 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.92□□□□□ -1.46
BRCA1P38398 AC090804.1-201ENST00000448870 490 ntBASIC5.92□□□□□ -1.46
BRCA1P38398 RN7SKP248-201ENST00000516278 305 ntBASIC5.92□□□□□ -1.46
BRCA1P38398 TRAV8-5-201ENST00000537369 341 ntBASIC5.92□□□□□ -1.46
BRCA1P38398 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
BRCA1P38398 RPL7P50-201ENST00000600588 727 ntBASIC5.92□□□□□ -1.46
BRCA1P38398 AL445567.2-201ENST00000618935 498 ntBASIC5.92□□□□□ -1.46
BRCA1P38398 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
BRCA1P38398 MGAM-208ENST00000549489 6525 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
BRCA1P38398 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
BRCA1P38398 TLK1P1-201ENST00000456760 2440 ntBASIC5.91□□□□□ -1.46
BRCA1P38398 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
BRCA1P38398 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
BRCA1P38398 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC5.91□□□□□ -1.46
BRCA1P38398 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC5.91□□□□□ -1.46
BRCA1P38398 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
BRCA1P38398 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC5.91□□□□□ -1.46
BRCA1P38398 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
BRCA1P38398 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
BRCA1P38398 AL390316.1-201ENST00000406279 553 ntBASIC5.91□□□□□ -1.46
BRCA1P38398 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC5.91□□□□□ -1.46
BRCA1P38398 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC5.91□□□□□ -1.46
BRCA1P38398 AC017019.1-201ENST00000426129 261 ntBASIC5.91□□□□□ -1.46
BRCA1P38398 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC5.91□□□□□ -1.46
BRCA1P38398 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC5.91□□□□□ -1.46
BRCA1P38398 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC5.91□□□□□ -1.46
BRCA1P38398 RNU1-6P-201ENST00000516290 144 ntBASIC5.91□□□□□ -1.46
BRCA1P38398 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
BRCA1P38398 MIR4444-1-201ENST00000581696 74 ntBASIC5.91□□□□□ -1.46
BRCA1P38398 MIR4444-2-201ENST00000584390 74 ntBASIC5.91□□□□□ -1.46
BRCA1P38398 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.91□□□□□ -1.46
BRCA1P38398 AC090948.2-201ENST00000607363 564 ntBASIC5.91□□□□□ -1.46
BRCA1P38398 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
BRCA1P38398 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
BRCA1P38398 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
BRCA1P38398 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
BRCA1P38398 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
BRCA1P38398 MTURN-202ENST00000324489 5605 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
BRCA1P38398 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
BRCA1P38398 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
BRCA1P38398 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
BRCA1P38398 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
BRCA1P38398 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
BRCA1P38398 ZFRP1-201ENST00000457579 2970 ntBASIC5.9□□□□□ -1.46
BRCA1P38398 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
BRCA1P38398 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
BRCA1P38398 LRRC37BP1-201ENST00000398851 714 ntBASIC5.9□□□□□ -1.46
BRCA1P38398 CYCSP19-201ENST00000411715 316 ntBASIC5.9□□□□□ -1.46
BRCA1P38398 RN7SL542P-201ENST00000467147 294 ntBASIC5.9□□□□□ -1.46
BRCA1P38398 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
BRCA1P38398 NIFKP7-201ENST00000503365 834 ntBASIC5.9□□□□□ -1.46
BRCA1P38398 SAP18P1-201ENST00000512058 390 ntBASIC5.9□□□□□ -1.46
BRCA1P38398 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC5.9□□□□□ -1.46
BRCA1P38398 RN7SKP67-201ENST00000515905 235 ntBASIC5.9□□□□□ -1.46
BRCA1P38398 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC5.9□□□□□ -1.46
BRCA1P38398 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC5.9□□□□□ -1.46
BRCA1P38398 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC5.9□□□□□ -1.46
BRCA1P38398 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
BRCA1P38398 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC5.9□□□□□ -1.46
BRCA1P38398 AL021877.2-201ENST00000624442 10684 ntBASIC5.9□□□□□ -1.46
BRCA1P38398 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC5.9□□□□□ -1.46
BRCA1P38398 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
BRCA1P38398 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
BRCA1P38398 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.47
BRCA1P38398 RN7SKP280-201ENST00000364196 304 ntBASIC5.9□□□□□ -1.47
BRCA1P38398 CR1-203ENST00000367051 7469 ntTSL 5 BASIC5.9□□□□□ -1.47
BRCA1P38398 CR1-204ENST00000367052 7469 ntTSL 5 BASIC5.9□□□□□ -1.47
BRCA1P38398 CR1-205ENST00000367053 7469 ntTSL 5 BASIC5.9□□□□□ -1.47
BRCA1P38398 GNG5P2-201ENST00000372054 207 ntBASIC5.9□□□□□ -1.47
BRCA1P38398 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.47
BRCA1P38398 ZRANB3-202ENST00000401392 6820 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.47
BRCA1P38398 AL357515.1-201ENST00000402967 542 ntBASIC5.9□□□□□ -1.47
BRCA1P38398 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC5.9□□□□□ -1.47
BRCA1P38398 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.9□□□□□ -1.47
BRCA1P38398 RRM2P4-201ENST00000441721 562 ntBASIC5.9□□□□□ -1.47
BRCA1P38398 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC5.9□□□□□ -1.47
BRCA1P38398 AC022133.1-201ENST00000490961 571 ntBASIC5.9□□□□□ -1.47
BRCA1P38398 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC5.9□□□□□ -1.47
BRCA1P38398 RNU1-45P-201ENST00000517191 141 ntBASIC5.9□□□□□ -1.47
BRCA1P38398 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
BRCA1P38398 MTCO1P49-201ENST00000523429 802 ntBASIC5.9□□□□□ -1.47
BRCA1P38398 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
BRCA1P38398 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
BRCA1P38398 AC053481.3-201ENST00000577881 843 ntBASIC5.9□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms