Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC6.32□□□□□ -1.4
SMARCA1P28370 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC6.32□□□□□ -1.4
SMARCA1P28370 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SMARCA1P28370 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SMARCA1P28370 RAD1P1-201ENST00000231383 813 ntBASIC6.32□□□□□ -1.4
SMARCA1P28370 RNA5SP335-201ENST00000363817 110 ntBASIC6.32□□□□□ -1.4
SMARCA1P28370 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
SMARCA1P28370 PEX12P1-201ENST00000400284 1048 ntBASIC6.32□□□□□ -1.4
SMARCA1P28370 TAF9BP2-201ENST00000400856 499 ntBASIC6.32□□□□□ -1.4
SMARCA1P28370 AL391361.1-201ENST00000405580 489 ntBASIC6.32□□□□□ -1.4
SMARCA1P28370 METTL5-204ENST00000409340 472 ntTSL 5 BASIC6.32□□□□□ -1.4
SMARCA1P28370 RPSAP35-201ENST00000413753 818 ntBASIC6.32□□□□□ -1.4
SMARCA1P28370 BTF3P9-201ENST00000418784 283 ntBASIC6.32□□□□□ -1.4
SMARCA1P28370 CYCSP12-201ENST00000437729 300 ntBASIC6.32□□□□□ -1.4
SMARCA1P28370 AC073465.2-201ENST00000440938 498 ntBASIC6.32□□□□□ -1.4
SMARCA1P28370 AC069277.2-201ENST00000454211 432 ntBASIC6.32□□□□□ -1.4
SMARCA1P28370 AC011225.1-201ENST00000457751 369 ntBASIC6.32□□□□□ -1.4
SMARCA1P28370 CYCSP20-201ENST00000473154 315 ntBASIC6.32□□□□□ -1.4
SMARCA1P28370 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC6.32□□□□□ -1.4
SMARCA1P28370 RPL7L1P4-201ENST00000513004 707 ntBASIC6.32□□□□□ -1.4
SMARCA1P28370 SNORA70.11-201ENST00000515987 138 ntBASIC6.32□□□□□ -1.4
SMARCA1P28370 SNORA70.13-201ENST00000516116 138 ntBASIC6.32□□□□□ -1.4
SMARCA1P28370 Y_RNA.717-201ENST00000517106 92 ntBASIC6.32□□□□□ -1.4
SMARCA1P28370 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC6.32□□□□□ -1.4
SMARCA1P28370 AC027026.1-201ENST00000532323 742 ntBASIC6.32□□□□□ -1.4
SMARCA1P28370 ASB8-202ENST00000535055 657 ntTSL 2 BASIC6.32□□□□□ -1.4
SMARCA1P28370 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC6.32□□□□□ -1.4
SMARCA1P28370 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC6.32□□□□□ -1.4
SMARCA1P28370 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SMARCA1P28370 AC124016.2-201ENST00000610058 665 ntBASIC6.32□□□□□ -1.4
SMARCA1P28370 MIR6886-201ENST00000619864 61 ntBASIC6.32□□□□□ -1.4
SMARCA1P28370 AL078595.3-201ENST00000623815 1166 ntBASIC6.32□□□□□ -1.4
SMARCA1P28370 AC068787.1-201ENST00000623908 691 ntBASIC6.32□□□□□ -1.4
SMARCA1P28370 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC6.32□□□□□ -1.4
SMARCA1P28370 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC6.32□□□□□ -1.4
SMARCA1P28370 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC6.32□□□□□ -1.4
SMARCA1P28370 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC6.32□□□□□ -1.4
SMARCA1P28370 ALB-214ENST00000509063 1911 ntTSL 5 BASIC6.32□□□□□ -1.4
SMARCA1P28370 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
SMARCA1P28370 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC6.32□□□□□ -1.4
SMARCA1P28370 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC6.32□□□□□ -1.4
SMARCA1P28370 AC138907.8-201ENST00000623981 2256 ntBASIC6.32□□□□□ -1.4
SMARCA1P28370 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SMARCA1P28370 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SMARCA1P28370 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
SMARCA1P28370 AC093849.1-201ENST00000563631 2209 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 AC079097.1-201ENST00000512187 1399 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 AC114774.1-201ENST00000507410 1770 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SMARCA1P28370 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SMARCA1P28370 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SMARCA1P28370 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC6.31□□□□□ -1.4
SMARCA1P28370 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
SMARCA1P28370 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SMARCA1P28370 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SMARCA1P28370 AC239868.2-201ENST00000564237 4527 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 OSBPL9P1-201ENST00000604744 1469 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 AC007618.1-201ENST00000366455 732 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
SMARCA1P28370 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
SMARCA1P28370 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
SMARCA1P28370 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
SMARCA1P28370 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
SMARCA1P28370 RNU6-354P-201ENST00000383862 107 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 RNU6-610P-201ENST00000384264 107 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC6.31□□□□□ -1.4
SMARCA1P28370 MTCYBP7-201ENST00000419540 1134 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 AC093084.1-201ENST00000424233 687 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 FO393414.1-201ENST00000428697 1184 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 HMGB3P5-201ENST00000428894 612 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC6.31□□□□□ -1.4
SMARCA1P28370 NDUFB4P8-201ENST00000435351 367 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC6.31□□□□□ -1.4
SMARCA1P28370 RPL7P33-201ENST00000444159 742 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 GAPDHP25-201ENST00000447061 1001 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC6.31□□□□□ -1.4
SMARCA1P28370 AC008379.1-201ENST00000463655 464 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 AL133445.1-201ENST00000467051 452 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
SMARCA1P28370 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SMARCA1P28370 SIAH1P1-201ENST00000479411 923 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC6.31□□□□□ -1.4
SMARCA1P28370 AC111000.6-201ENST00000514471 709 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 SCARNA16.4-201ENST00000516956 187 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 RN7SKP99-201ENST00000517028 307 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 AC021451.1-201ENST00000523498 1129 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC6.31□□□□□ -1.4
SMARCA1P28370 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC6.31□□□□□ -1.4
SMARCA1P28370 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC6.31□□□□□ -1.4
SMARCA1P28370 AL512310.9-201ENST00000553311 948 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC6.31□□□□□ -1.4
SMARCA1P28370 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC6.31□□□□□ -1.4
SMARCA1P28370 GMFG-212ENST00000602185 423 ntTSL 3 BASIC6.31□□□□□ -1.4
SMARCA1P28370 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC6.31□□□□□ -1.4
SMARCA1P28370 AC109309.2-201ENST00000612597 332 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 AC140725.3-201ENST00000616193 880 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 AC078880.5-201ENST00000617845 421 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 MIR6837-201ENST00000620884 64 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 AL356863.1-201ENST00000623378 1080 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC6.31□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms