Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL5A3P25940 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL5A3P25940 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC6.04□□□□□ -1.44
COL5A3P25940 RPS17P8-201ENST00000434525 335 ntBASIC6.04□□□□□ -1.44
COL5A3P25940 FPGT-203ENST00000467578 601 ntTSL 2 BASIC6.04□□□□□ -1.44
COL5A3P25940 AC007537.2-201ENST00000472093 511 ntBASIC6.04□□□□□ -1.44
COL5A3P25940 AC104763.1-201ENST00000475274 360 ntBASIC6.04□□□□□ -1.44
COL5A3P25940 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC6.04□□□□□ -1.44
COL5A3P25940 TRAV8-5-201ENST00000537369 341 ntBASIC6.04□□□□□ -1.44
COL5A3P25940 AL591034.3-201ENST00000605511 685 ntBASIC6.04□□□□□ -1.44
COL5A3P25940 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC6.04□□□□□ -1.44
COL5A3P25940 FTO-223ENST00000640179 210 ntTSL 5 BASIC6.04□□□□□ -1.44
COL5A3P25940 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
COL5A3P25940 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL5A3P25940 AC108751.5-201ENST00000492880 1336 ntBASIC6.04□□□□□ -1.44
COL5A3P25940 CR1-203ENST00000367051 7469 ntTSL 5 BASIC6.04□□□□□ -1.44
COL5A3P25940 CR1-204ENST00000367052 7469 ntTSL 5 BASIC6.04□□□□□ -1.44
COL5A3P25940 CR1-205ENST00000367053 7469 ntTSL 5 BASIC6.04□□□□□ -1.44
COL5A3P25940 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC6.04□□□□□ -1.44
COL5A3P25940 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
COL5A3P25940 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL5A3P25940 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
COL5A3P25940 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC6.04□□□□□ -1.44
COL5A3P25940 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
COL5A3P25940 DLG2-201ENST00000280241 7730 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
COL5A3P25940 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL5A3P25940 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL5A3P25940 OSER1-202ENST00000372970 1616 ntAPPRIS P1 TSL 3 BASIC6.03□□□□□ -1.44
COL5A3P25940 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL5A3P25940 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
COL5A3P25940 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC6.03□□□□□ -1.44
COL5A3P25940 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC6.03□□□□□ -1.44
COL5A3P25940 AC004980.3-201ENST00000447046 365 ntBASIC6.03□□□□□ -1.44
COL5A3P25940 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC6.03□□□□□ -1.44
COL5A3P25940 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC6.03□□□□□ -1.44
COL5A3P25940 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC6.03□□□□□ -1.44
COL5A3P25940 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC6.03□□□□□ -1.44
COL5A3P25940 MRPL49P2-201ENST00000521066 465 ntBASIC6.03□□□□□ -1.44
COL5A3P25940 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC6.03□□□□□ -1.44
COL5A3P25940 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
COL5A3P25940 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC6.03□□□□□ -1.44
COL5A3P25940 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC6.03□□□□□ -1.44
COL5A3P25940 AL033543.1-201ENST00000623440 13454 ntBASIC6.03□□□□□ -1.44
COL5A3P25940 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL5A3P25940 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC6.03□□□□□ -1.44
COL5A3P25940 RBFOX2-205ENST00000405409 6932 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL5A3P25940 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL5A3P25940 SCIN-201ENST00000297029 9713 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL5A3P25940 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
COL5A3P25940 GAPDHP49-201ENST00000421421 961 ntBASIC6.02□□□□□ -1.45
COL5A3P25940 IGHVIII-47-1-201ENST00000518187 331 ntBASIC6.02□□□□□ -1.45
COL5A3P25940 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC6.02□□□□□ -1.45
COL5A3P25940 AP000619.2-201ENST00000546014 969 ntBASIC6.02□□□□□ -1.45
COL5A3P25940 AC084824.1-201ENST00000550917 1005 ntBASIC6.02□□□□□ -1.45
COL5A3P25940 AC093249.4-201ENST00000564755 259 ntBASIC6.02□□□□□ -1.45
COL5A3P25940 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC6.02□□□□□ -1.45
COL5A3P25940 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC6.02□□□□□ -1.45
COL5A3P25940 AC069061.3-201ENST00000582254 823 ntBASIC6.02□□□□□ -1.45
COL5A3P25940 AC245389.2-201ENST00000616023 576 ntBASIC6.02□□□□□ -1.45
COL5A3P25940 AC242843.1-201ENST00000618702 573 ntBASIC6.02□□□□□ -1.45
COL5A3P25940 AC010480.1-201ENST00000624823 684 ntBASIC6.02□□□□□ -1.45
COL5A3P25940 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
COL5A3P25940 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC6.02□□□□□ -1.45
COL5A3P25940 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL5A3P25940 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL5A3P25940 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL5A3P25940 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL5A3P25940 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC6.02□□□□□ -1.45
COL5A3P25940 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL5A3P25940 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC6.02□□□□□ -1.45
COL5A3P25940 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC6.02□□□□□ -1.45
COL5A3P25940 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC6.02□□□□□ -1.45
COL5A3P25940 RN7SL517P-201ENST00000462240 305 ntBASIC6.02□□□□□ -1.45
COL5A3P25940 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC6.02□□□□□ -1.45
COL5A3P25940 NPM1P6-201ENST00000521088 871 ntBASIC6.02□□□□□ -1.45
COL5A3P25940 AC100784.1-201ENST00000522790 310 ntBASIC6.02□□□□□ -1.45
COL5A3P25940 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
COL5A3P25940 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC6.02□□□□□ -1.45
COL5A3P25940 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
COL5A3P25940 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC6.02□□□□□ -1.45
COL5A3P25940 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
COL5A3P25940 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL5A3P25940 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC6.02□□□□□ -1.45
COL5A3P25940 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL5A3P25940 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC6.01□□□□□ -1.45
COL5A3P25940 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL5A3P25940 AC135352.1-201ENST00000506173 1418 ntBASIC6.01□□□□□ -1.45
COL5A3P25940 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL5A3P25940 Z95114.1-201ENST00000624264 14574 ntBASIC6.01□□□□□ -1.45
COL5A3P25940 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC6.01□□□□□ -1.45
COL5A3P25940 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL5A3P25940 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL5A3P25940 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL5A3P25940 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL5A3P25940 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC6.01□□□□□ -1.45
COL5A3P25940 GAS5-208ENST00000425771 242 ntTSL 3 BASIC6.01□□□□□ -1.45
COL5A3P25940 AC010618.1-201ENST00000469924 477 ntBASIC6.01□□□□□ -1.45
COL5A3P25940 RPL21P126-201ENST00000470049 478 ntBASIC6.01□□□□□ -1.45
COL5A3P25940 IGLVIV-65-201ENST00000517313 360 ntBASIC6.01□□□□□ -1.45
COL5A3P25940 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC6.01□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms