Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXD4P09016 AC011493.1-201ENST00000596753 1632 ntBASIC4.83□□□□□ -1.64
HOXD4P09016 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.82□□□□□ -1.64
HOXD4P09016 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HOXD4P09016 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
HOXD4P09016 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXD4P09016 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
HOXD4P09016 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HOXD4P09016 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HOXD4P09016 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC4.82□□□□□ -1.64
HOXD4P09016 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HOXD4P09016 U3.2-201ENST00000362981 210 ntBASIC4.82□□□□□ -1.64
HOXD4P09016 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC4.82□□□□□ -1.64
HOXD4P09016 CDC123-202ENST00000378900 933 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXD4P09016 RNU1-106P-201ENST00000384382 164 ntBASIC4.82□□□□□ -1.64
HOXD4P09016 AL356968.2-201ENST00000412769 1257 ntBASIC4.82□□□□□ -1.64
HOXD4P09016 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC4.82□□□□□ -1.64
HOXD4P09016 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HOXD4P09016 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HOXD4P09016 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXD4P09016 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXD4P09016 AC006466.1-201ENST00000438721 289 ntBASIC4.82□□□□□ -1.64
HOXD4P09016 AL359265.1-201ENST00000440296 795 ntBASIC4.82□□□□□ -1.64
HOXD4P09016 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.82□□□□□ -1.64
HOXD4P09016 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXD4P09016 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXD4P09016 EIF4EBP2P1-201ENST00000450009 343 ntBASIC4.82□□□□□ -1.64
HOXD4P09016 MTND3P4-201ENST00000453537 303 ntBASIC4.82□□□□□ -1.64
HOXD4P09016 AZGP1P2-201ENST00000454506 345 ntBASIC4.82□□□□□ -1.64
HOXD4P09016 AL035090.1-201ENST00000454835 332 ntBASIC4.82□□□□□ -1.64
HOXD4P09016 AC108161.1-201ENST00000461060 402 ntBASIC4.82□□□□□ -1.64
HOXD4P09016 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC4.82□□□□□ -1.64
HOXD4P09016 AC109464.1-201ENST00000511091 819 ntBASIC4.82□□□□□ -1.64
HOXD4P09016 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXD4P09016 ARL6IP1P3-201ENST00000524544 560 ntBASIC4.82□□□□□ -1.64
HOXD4P09016 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.82□□□□□ -1.64
HOXD4P09016 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXD4P09016 MTND2P17-201ENST00000550281 688 ntBASIC4.82□□□□□ -1.64
HOXD4P09016 MIR4436B2-201ENST00000581415 91 ntBASIC4.82□□□□□ -1.64
HOXD4P09016 RN7SL356P-201ENST00000582228 248 ntBASIC4.82□□□□□ -1.64
HOXD4P09016 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXD4P09016 MIR4436B1-201ENST00000583272 91 ntBASIC4.82□□□□□ -1.64
HOXD4P09016 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC4.82□□□□□ -1.64
HOXD4P09016 AC011447.4-201ENST00000587562 111 ntBASIC4.82□□□□□ -1.64
HOXD4P09016 VN1R81P-201ENST00000602085 372 ntBASIC4.82□□□□□ -1.64
HOXD4P09016 AC005252.1-201ENST00000604518 1063 ntBASIC4.82□□□□□ -1.64
HOXD4P09016 AC007620.3-201ENST00000608131 497 ntBASIC4.82□□□□□ -1.64
HOXD4P09016 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HOXD4P09016 AC011933.2-201ENST00000578539 2790 ntBASIC4.82□□□□□ -1.64
HOXD4P09016 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXD4P09016 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HOXD4P09016 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HOXD4P09016 ALB-220ENST00000621628 1606 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXD4P09016 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC4.82□□□□□ -1.64
HOXD4P09016 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HOXD4P09016 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.82□□□□□ -1.64
HOXD4P09016 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXD4P09016 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXD4P09016 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXD4P09016 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.81□□□□□ -1.64
HOXD4P09016 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC4.81□□□□□ -1.64
HOXD4P09016 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
HOXD4P09016 MAX-203ENST00000341653 330 ntTSL 2 BASIC4.81□□□□□ -1.64
HOXD4P09016 RNU4-23P-201ENST00000362839 140 ntBASIC4.81□□□□□ -1.64
HOXD4P09016 RNA5SP326-201ENST00000363209 110 ntBASIC4.81□□□□□ -1.64
HOXD4P09016 RNU1-43P-201ENST00000365052 165 ntBASIC4.81□□□□□ -1.64
HOXD4P09016 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
HOXD4P09016 SSX3-202ENST00000376893 800 ntTSL 2 BASIC4.81□□□□□ -1.64
HOXD4P09016 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC4.81□□□□□ -1.64
HOXD4P09016 AL109941.1-201ENST00000401925 229 ntBASIC4.81□□□□□ -1.64
HOXD4P09016 DNAJA1P4-201ENST00000406473 1166 ntBASIC4.81□□□□□ -1.64
HOXD4P09016 U3.36-201ENST00000408418 213 ntBASIC4.81□□□□□ -1.64
HOXD4P09016 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXD4P09016 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXD4P09016 AC093162.1-201ENST00000419682 124 ntBASIC4.81□□□□□ -1.64
HOXD4P09016 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HOXD4P09016 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXD4P09016 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXD4P09016 HNRNPA3P4-201ENST00000427514 803 ntBASIC4.81□□□□□ -1.64
HOXD4P09016 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXD4P09016 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXD4P09016 MTND6P5-201ENST00000448266 512 ntBASIC4.81□□□□□ -1.64
HOXD4P09016 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXD4P09016 AL591623.2-201ENST00000449978 222 ntBASIC4.81□□□□□ -1.64
HOXD4P09016 MTND2P3-201ENST00000452458 470 ntBASIC4.81□□□□□ -1.64
HOXD4P09016 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXD4P09016 AC089999.1-201ENST00000460336 374 ntBASIC4.81□□□□□ -1.64
HOXD4P09016 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXD4P09016 AC021660.1-201ENST00000465006 554 ntBASIC4.81□□□□□ -1.64
HOXD4P09016 RN7SL860P-201ENST00000473738 223 ntBASIC4.81□□□□□ -1.64
HOXD4P09016 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC4.81□□□□□ -1.64
HOXD4P09016 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC4.81□□□□□ -1.64
HOXD4P09016 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC4.81□□□□□ -1.64
HOXD4P09016 RNA5SP464-201ENST00000516251 108 ntBASIC4.81□□□□□ -1.64
HOXD4P09016 RNU6-941P-201ENST00000516346 108 ntBASIC4.81□□□□□ -1.64
HOXD4P09016 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC4.81□□□□□ -1.64
HOXD4P09016 AP001922.4-201ENST00000526967 290 ntBASIC4.81□□□□□ -1.64
HOXD4P09016 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXD4P09016 AC024940.3-201ENST00000538551 316 ntBASIC4.81□□□□□ -1.64
HOXD4P09016 YWHABP2-201ENST00000540201 713 ntBASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms