Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
RB1P06400 ADIG-201ENST00000373348 430 ntTSL 2 BASIC5.67□□□□□ -1.5
RB1P06400 PEX12P1-201ENST00000400284 1048 ntBASIC5.67□□□□□ -1.5
RB1P06400 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.67□□□□□ -1.5
RB1P06400 RPL7P56-201ENST00000429441 717 ntBASIC5.67□□□□□ -1.5
RB1P06400 AL606490.7-201ENST00000433136 191 ntBASIC5.67□□□□□ -1.5
RB1P06400 AC007563.3-201ENST00000433233 371 ntBASIC5.67□□□□□ -1.5
RB1P06400 ARAFP2-201ENST00000440565 559 ntBASIC5.67□□□□□ -1.5
RB1P06400 VN1R48P-201ENST00000448149 1036 ntBASIC5.67□□□□□ -1.5
RB1P06400 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
RB1P06400 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC5.67□□□□□ -1.5
RB1P06400 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.67□□□□□ -1.5
RB1P06400 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.67□□□□□ -1.5
RB1P06400 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.67□□□□□ -1.5
RB1P06400 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.67□□□□□ -1.5
RB1P06400 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.67□□□□□ -1.5
RB1P06400 RN7SKP260-201ENST00000516907 149 ntBASIC5.67□□□□□ -1.5
RB1P06400 AC012400.1-201ENST00000518452 381 ntBASIC5.67□□□□□ -1.5
RB1P06400 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.67□□□□□ -1.5
RB1P06400 AC020937.1-201ENST00000519677 1013 ntBASIC5.67□□□□□ -1.5
RB1P06400 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
RB1P06400 AC122688.1-201ENST00000541494 223 ntBASIC5.67□□□□□ -1.5
RB1P06400 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC5.67□□□□□ -1.5
RB1P06400 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC5.67□□□□□ -1.5
RB1P06400 FAM106CP-201ENST00000582212 507 ntBASIC5.67□□□□□ -1.5
RB1P06400 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC5.67□□□□□ -1.5
RB1P06400 AC010487.1-201ENST00000594408 1172 ntBASIC5.67□□□□□ -1.5
RB1P06400 AL133247.2-201ENST00000603236 482 ntBASIC5.67□□□□□ -1.5
RB1P06400 MIR378J-201ENST00000611988 109 ntBASIC5.67□□□□□ -1.5
RB1P06400 AC087385.3-201ENST00000620477 187 ntBASIC5.67□□□□□ -1.5
RB1P06400 AP003499.2-201ENST00000624100 483 ntBASIC5.67□□□□□ -1.5
RB1P06400 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC5.67□□□□□ -1.5
RB1P06400 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC5.67□□□□□ -1.5
RB1P06400 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
RB1P06400 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
RB1P06400 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.67□□□□□ -1.5
RB1P06400 MTCO1P15-201ENST00000529569 1526 ntBASIC5.67□□□□□ -1.5
RB1P06400 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.67□□□□□ -1.5
RB1P06400 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC5.67□□□□□ -1.5
RB1P06400 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.67□□□□□ -1.5
RB1P06400 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
RB1P06400 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.67□□□□□ -1.5
RB1P06400 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC5.67□□□□□ -1.5
RB1P06400 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
RB1P06400 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
RB1P06400 AC010266.2-201ENST00000564741 3255 ntBASIC5.66□□□□□ -1.5
RB1P06400 AC092747.4-201ENST00000620519 1861 ntBASIC5.66□□□□□ -1.5
RB1P06400 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
RB1P06400 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
RB1P06400 DDX6P1-205ENST00000441966 1436 ntBASIC5.66□□□□□ -1.5
RB1P06400 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC5.66□□□□□ -1.5
RB1P06400 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
RB1P06400 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
RB1P06400 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
RB1P06400 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
RB1P06400 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
RB1P06400 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
RB1P06400 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.66□□□□□ -1.5
RB1P06400 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC5.66□□□□□ -1.5
RB1P06400 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
RB1P06400 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
RB1P06400 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
RB1P06400 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.66□□□□□ -1.5
RB1P06400 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
RB1P06400 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
RB1P06400 RNA5SP105-201ENST00000391123 113 ntBASIC5.66□□□□□ -1.5
RB1P06400 SNORA79B-201ENST00000410557 148 ntBASIC5.66□□□□□ -1.5
RB1P06400 RPSAP35-201ENST00000413753 818 ntBASIC5.66□□□□□ -1.5
RB1P06400 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC5.66□□□□□ -1.5
RB1P06400 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC5.66□□□□□ -1.5
RB1P06400 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC5.66□□□□□ -1.5
RB1P06400 RPS4XP16-201ENST00000427198 791 ntBASIC5.66□□□□□ -1.5
RB1P06400 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC5.66□□□□□ -1.5
RB1P06400 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC5.66□□□□□ -1.5
RB1P06400 AC008072.1-201ENST00000434254 824 ntBASIC5.66□□□□□ -1.5
RB1P06400 AC046176.1-201ENST00000435260 1170 ntBASIC5.66□□□□□ -1.5
RB1P06400 GSTA7P-201ENST00000438425 448 ntBASIC5.66□□□□□ -1.5
RB1P06400 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.66□□□□□ -1.5
RB1P06400 KNOP1P3-201ENST00000446933 426 ntBASIC5.66□□□□□ -1.5
RB1P06400 AC108751.3-201ENST00000461814 1020 ntBASIC5.66□□□□□ -1.5
RB1P06400 RN7SL188P-201ENST00000469842 285 ntBASIC5.66□□□□□ -1.5
RB1P06400 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC5.66□□□□□ -1.5
RB1P06400 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC5.66□□□□□ -1.5
RB1P06400 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC5.66□□□□□ -1.5
RB1P06400 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC5.66□□□□□ -1.5
RB1P06400 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.66□□□□□ -1.5
RB1P06400 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.66□□□□□ -1.5
RB1P06400 OR8K2P-201ENST00000524645 927 ntBASIC5.66□□□□□ -1.5
RB1P06400 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
RB1P06400 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.66□□□□□ -1.5
RB1P06400 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC5.66□□□□□ -1.5
RB1P06400 Z95327.3-201ENST00000610385 572 ntBASIC5.66□□□□□ -1.5
RB1P06400 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC5.66□□□□□ -1.5
RB1P06400 AC019080.5-201ENST00000624891 757 ntBASIC5.66□□□□□ -1.5
RB1P06400 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.66□□□□□ -1.5
RB1P06400 AC135068.12-201ENST00000637370 931 ntBASIC5.66□□□□□ -1.5
RB1P06400 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
RB1P06400 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
RB1P06400 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
RB1P06400 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms