Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC9.67□□□□□ -0.86
SHROOM4Q9ULL8 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC9.67□□□□□ -0.86
SHROOM4Q9ULL8 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC9.67□□□□□ -0.86
SHROOM4Q9ULL8 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC9.67□□□□□ -0.86
SHROOM4Q9ULL8 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
SHROOM4Q9ULL8 AC016745.2-201ENST00000608834 3443 ntBASIC9.67□□□□□ -0.86
SHROOM4Q9ULL8 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
SHROOM4Q9ULL8 AC068733.2-201ENST00000605434 1418 ntBASIC9.67□□□□□ -0.86
SHROOM4Q9ULL8 Z98755.1-201ENST00000407015 1384 ntBASIC9.67□□□□□ -0.86
SHROOM4Q9ULL8 AL591135.1-201ENST00000401578 5914 ntBASIC9.67□□□□□ -0.86
SHROOM4Q9ULL8 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 XIST-201ENST00000416330 750 ntTSL 2 BASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 CREM-230ENST00000474931 626 ntTSL 2 BASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 RPL21P129-201ENST00000491732 478 ntBASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 BNIP3P35-201ENST00000604530 490 ntBASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 MTCO1P8-201ENST00000416914 1523 ntBASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 IQCB2P-201ENST00000401788 1633 ntBASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 SNORA70F-201ENST00000384142 135 ntBASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 RPS27AP6-201ENST00000427962 448 ntBASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 REG1CP-206ENST00000447469 496 ntBASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 PPIAP21-201ENST00000464473 501 ntBASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 AC010350.1-201ENST00000504908 231 ntBASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 MAL2-201ENST00000522112 573 ntTSL 4 BASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 UBA2-208ENST00000592791 910 ntTSL 2 BASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC9.66□□□□□ -0.86
SHROOM4Q9ULL8 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC9.65□□□□□ -0.86
SHROOM4Q9ULL8 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
SHROOM4Q9ULL8 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC9.65□□□□□ -0.86
SHROOM4Q9ULL8 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC9.65□□□□□ -0.86
SHROOM4Q9ULL8 AL079305.1-201ENST00000623159 3008 ntBASIC9.65□□□□□ -0.86
SHROOM4Q9ULL8 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
SHROOM4Q9ULL8 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC9.65□□□□□ -0.87
SHROOM4Q9ULL8 Z97832.1-201ENST00000402490 328 ntBASIC9.65□□□□□ -0.87
SHROOM4Q9ULL8 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC9.65□□□□□ -0.87
SHROOM4Q9ULL8 NPM1P5-201ENST00000557228 838 ntBASIC9.65□□□□□ -0.87
SHROOM4Q9ULL8 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC9.65□□□□□ -0.87
SHROOM4Q9ULL8 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.87
SHROOM4Q9ULL8 MIR4715-201ENST00000584117 79 ntBASIC9.65□□□□□ -0.87
SHROOM4Q9ULL8 AC138473.1-201ENST00000605717 526 ntBASIC9.65□□□□□ -0.87
SHROOM4Q9ULL8 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC9.65□□□□□ -0.87
SHROOM4Q9ULL8 OR52H1-202ENST00000641796 1061 ntBASIC9.65□□□□□ -0.87
SHROOM4Q9ULL8 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.87
SHROOM4Q9ULL8 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC9.65□□□□□ -0.87
SHROOM4Q9ULL8 MAPK6PS2-201ENST00000379571 2060 ntBASIC9.65□□□□□ -0.87
SHROOM4Q9ULL8 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC9.65□□□□□ -0.87
SHROOM4Q9ULL8 AC079298.1-201ENST00000625026 1619 ntBASIC9.64□□□□□ -0.87
SHROOM4Q9ULL8 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
SHROOM4Q9ULL8 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
SHROOM4Q9ULL8 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC9.64□□□□□ -0.87
SHROOM4Q9ULL8 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
SHROOM4Q9ULL8 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC9.64□□□□□ -0.87
SHROOM4Q9ULL8 RN7SKP145-201ENST00000363291 303 ntBASIC9.64□□□□□ -0.87
SHROOM4Q9ULL8 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC9.64□□□□□ -0.87
SHROOM4Q9ULL8 NACAP7-201ENST00000407371 609 ntBASIC9.64□□□□□ -0.87
SHROOM4Q9ULL8 SNX10-203ENST00000409367 746 ntTSL 5 BASIC9.64□□□□□ -0.87
SHROOM4Q9ULL8 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC9.64□□□□□ -0.87
SHROOM4Q9ULL8 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC9.64□□□□□ -0.87
SHROOM4Q9ULL8 AL359265.1-201ENST00000440296 795 ntBASIC9.64□□□□□ -0.87
SHROOM4Q9ULL8 RN7SL41P-201ENST00000476144 297 ntBASIC9.64□□□□□ -0.87
SHROOM4Q9ULL8 AC097173.1-201ENST00000505862 819 ntBASIC9.64□□□□□ -0.87
SHROOM4Q9ULL8 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC9.64□□□□□ -0.87
SHROOM4Q9ULL8 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
SHROOM4Q9ULL8 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC9.64□□□□□ -0.87
SHROOM4Q9ULL8 AL049874.4-201ENST00000557593 255 ntBASIC9.64□□□□□ -0.87
SHROOM4Q9ULL8 TVP23CP2-201ENST00000571473 623 ntBASIC9.64□□□□□ -0.87
SHROOM4Q9ULL8 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
SHROOM4Q9ULL8 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
SHROOM4Q9ULL8 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
SHROOM4Q9ULL8 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC9.63□□□□□ -0.87
SHROOM4Q9ULL8 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
SHROOM4Q9ULL8 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC9.63□□□□□ -0.87
SHROOM4Q9ULL8 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC9.63□□□□□ -0.87
SHROOM4Q9ULL8 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
SHROOM4Q9ULL8 SLC9B1P4-201ENST00000421957 1288 ntBASIC9.63□□□□□ -0.87
SHROOM4Q9ULL8 OR52A4P-203ENST00000498233 1014 ntBASIC9.63□□□□□ -0.87
SHROOM4Q9ULL8 ENPP7P9-201ENST00000514456 627 ntBASIC9.63□□□□□ -0.87
SHROOM4Q9ULL8 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC9.63□□□□□ -0.87
SHROOM4Q9ULL8 RGS5-219ENST00000528019 512 ntTSL 4 BASIC9.63□□□□□ -0.87
SHROOM4Q9ULL8 MIR4277-201ENST00000578298 84 ntBASIC9.63□□□□□ -0.87
SHROOM4Q9ULL8 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC9.63□□□□□ -0.87
SHROOM4Q9ULL8 AC098935.2-201ENST00000604222 466 ntBASIC9.63□□□□□ -0.87
SHROOM4Q9ULL8 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms