Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 TRBV8-1-201ENST00000481590 279 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AC026782.2-201ENST00000510845 636 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AC093816.1-201ENST00000515076 913 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 Y_RNA.695-201ENST00000516715 107 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AC067904.2-201ENST00000517322 1283 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 LINC02237-201ENST00000521753 805 ntTSL 3 BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AC008055.1-201ENST00000547032 609 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AL121579.1-201ENST00000555129 305 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AC245505.1-201ENST00000556398 224 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 DPPA3P2-202ENST00000557188 1219 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AC092325.1-201ENST00000566449 554 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 RN7SL66P-201ENST00000582099 264 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AP005262.1-201ENST00000582646 997 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 RN7SL475P-201ENST00000583379 298 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AC026898.1-201ENST00000586404 571 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AC024060.1-201ENST00000607052 494 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AC009878.1-201ENST00000621819 340 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AC004009.2-201ENST00000623016 728 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 CR381670.1-201ENST00000624291 1693 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 MTND5P17-201ENST00000418405 1603 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AL158152.1-201ENST00000602652 1435 ntBASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 RNA5SP453-201ENST00000362503 119 ntBASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 RNU6-114P-201ENST00000384704 105 ntBASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 U3.28-201ENST00000391249 210 ntBASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 ATP5F1P3-201ENST00000397213 657 ntBASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 LSM5-206ENST00000409987 504 ntTSL 5 BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 AL354766.1-201ENST00000423396 542 ntBASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 USP24P1-201ENST00000433802 779 ntBASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 UBQLN1P1-207ENST00000441056 1169 ntBASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 RPS6P2-201ENST00000454208 705 ntBASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 AC104763.1-201ENST00000475274 360 ntBASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 AC079382.1-201ENST00000493346 557 ntBASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 RNU6-1334P-201ENST00000516032 105 ntBASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 RNU6-943P-201ENST00000516960 98 ntBASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 AC135983.3-201ENST00000528049 1226 ntBASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 AC124891.1-201ENST00000536322 519 ntBASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 SRP14-AS1-203ENST00000560341 669 ntTSL 2 BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 NPM1P47-201ENST00000560843 856 ntBASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 AC093524.1-201ENST00000564266 1094 ntBASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 MIR3189-201ENST00000578735 73 ntBASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 DHFRP1-201ENST00000579682 559 ntBASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 AC008945.2-201ENST00000606056 604 ntBASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 LIPF-205ENST00000608620 1290 ntTSL 2 BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 AC006924.1-201ENST00000610750 559 ntBASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 AC244196.4-201ENST00000611787 392 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 MIR6885-201ENST00000612241 66 ntBASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms