Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
LHX3Q9UBR4 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
LHX3Q9UBR4 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
LHX3Q9UBR4 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC5.1□□□□□ -1.59
LHX3Q9UBR4 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
LHX3Q9UBR4 RNA5SP123-201ENST00000363244 119 ntBASIC5.1□□□□□ -1.59
LHX3Q9UBR4 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
LHX3Q9UBR4 CHMP1B2P-201ENST00000399581 597 ntBASIC5.1□□□□□ -1.59
LHX3Q9UBR4 SEPT7P8-201ENST00000413308 775 ntBASIC5.1□□□□□ -1.59
LHX3Q9UBR4 AC009506.2-201ENST00000420635 840 ntBASIC5.1□□□□□ -1.59
LHX3Q9UBR4 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC5.1□□□□□ -1.59
LHX3Q9UBR4 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC5.1□□□□□ -1.59
LHX3Q9UBR4 TRY2P-201ENST00000448860 689 ntBASIC5.1□□□□□ -1.59
LHX3Q9UBR4 SSR3-206ENST00000476217 807 ntTSL 3 BASIC5.1□□□□□ -1.59
LHX3Q9UBR4 RN7SL826P-201ENST00000479724 288 ntBASIC5.1□□□□□ -1.59
LHX3Q9UBR4 RN7SL244P-201ENST00000493405 297 ntBASIC5.1□□□□□ -1.59
LHX3Q9UBR4 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.1□□□□□ -1.59
LHX3Q9UBR4 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC5.1□□□□□ -1.59
LHX3Q9UBR4 OR5AZ1P-201ENST00000527448 943 ntBASIC5.1□□□□□ -1.59
LHX3Q9UBR4 AP001804.2-201ENST00000533932 910 ntBASIC5.1□□□□□ -1.59
LHX3Q9UBR4 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC5.1□□□□□ -1.59
LHX3Q9UBR4 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.1□□□□□ -1.59
LHX3Q9UBR4 NDUFB4P11-201ENST00000560510 395 ntBASIC5.1□□□□□ -1.59
LHX3Q9UBR4 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC5.1□□□□□ -1.59
LHX3Q9UBR4 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC5.1□□□□□ -1.59
LHX3Q9UBR4 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
LHX3Q9UBR4 AC007342.5-201ENST00000571340 2142 ntBASIC5.1□□□□□ -1.59
LHX3Q9UBR4 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.1□□□□□ -1.59
LHX3Q9UBR4 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
LHX3Q9UBR4 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC5.1□□□□□ -1.59
LHX3Q9UBR4 AC018695.5-201ENST00000605872 315 ntBASIC5.1□□□□□ -1.59
LHX3Q9UBR4 EIF3FP1-201ENST00000613970 806 ntBASIC5.1□□□□□ -1.59
LHX3Q9UBR4 AL138820.1-201ENST00000617901 5305 ntBASIC5.1□□□□□ -1.59
LHX3Q9UBR4 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC5.1□□□□□ -1.59
LHX3Q9UBR4 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC5.1□□□□□ -1.59
LHX3Q9UBR4 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
LHX3Q9UBR4 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
LHX3Q9UBR4 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
LHX3Q9UBR4 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC5.1□□□□□ -1.59
LHX3Q9UBR4 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.1□□□□□ -1.59
LHX3Q9UBR4 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
LHX3Q9UBR4 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.59
LHX3Q9UBR4 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.09□□□□□ -1.59
LHX3Q9UBR4 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.09□□□□□ -1.59
LHX3Q9UBR4 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
LHX3Q9UBR4 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
LHX3Q9UBR4 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
LHX3Q9UBR4 RN7SKP95-201ENST00000362860 303 ntBASIC5.09□□□□□ -1.59
LHX3Q9UBR4 SNORA74A-201ENST00000364089 198 ntBASIC5.09□□□□□ -1.59
LHX3Q9UBR4 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
LHX3Q9UBR4 AL672167.2-201ENST00000377164 879 ntBASIC5.09□□□□□ -1.59
LHX3Q9UBR4 SNORA70.10-201ENST00000384515 134 ntBASIC5.09□□□□□ -1.59
LHX3Q9UBR4 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.09□□□□□ -1.59
LHX3Q9UBR4 GLS-203ENST00000409215 632 ntTSL 4 BASIC5.09□□□□□ -1.59
LHX3Q9UBR4 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC5.09□□□□□ -1.59
LHX3Q9UBR4 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC5.09□□□□□ -1.59
LHX3Q9UBR4 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
LHX3Q9UBR4 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC5.09□□□□□ -1.59
LHX3Q9UBR4 NPM1P22-201ENST00000427761 952 ntBASIC5.09□□□□□ -1.59
LHX3Q9UBR4 AC097523.2-201ENST00000435551 652 ntBASIC5.09□□□□□ -1.59
LHX3Q9UBR4 TXNP5-201ENST00000441043 315 ntBASIC5.09□□□□□ -1.59
LHX3Q9UBR4 RPL7P61-201ENST00000451721 751 ntBASIC5.09□□□□□ -1.59
LHX3Q9UBR4 HMGB1P4-201ENST00000455362 567 ntBASIC5.09□□□□□ -1.59
LHX3Q9UBR4 AC108751.3-201ENST00000461814 1020 ntBASIC5.09□□□□□ -1.59
LHX3Q9UBR4 AC098583.1-201ENST00000480875 255 ntBASIC5.09□□□□□ -1.59
LHX3Q9UBR4 MTND3P6-201ENST00000485242 339 ntBASIC5.09□□□□□ -1.59
LHX3Q9UBR4 AGGF1P3-201ENST00000493675 1213 ntBASIC5.09□□□□□ -1.59
LHX3Q9UBR4 AC005000.1-201ENST00000536192 288 ntBASIC5.09□□□□□ -1.59
LHX3Q9UBR4 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
LHX3Q9UBR4 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC5.09□□□□□ -1.59
LHX3Q9UBR4 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
LHX3Q9UBR4 EIF1P5-201ENST00000585002 234 ntBASIC5.09□□□□□ -1.59
LHX3Q9UBR4 FAM60CP-201ENST00000591086 664 ntBASIC5.09□□□□□ -1.59
LHX3Q9UBR4 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.09□□□□□ -1.59
LHX3Q9UBR4 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.09□□□□□ -1.59
LHX3Q9UBR4 AL159169.2-201ENST00000610061 1269 ntBASIC5.09□□□□□ -1.59
LHX3Q9UBR4 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.09□□□□□ -1.59
LHX3Q9UBR4 AL590410.1-201ENST00000617925 333 ntBASIC5.09□□□□□ -1.59
LHX3Q9UBR4 CASC19-222ENST00000641321 1173 ntBASIC5.09□□□□□ -1.59
LHX3Q9UBR4 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.09□□□□□ -1.59
LHX3Q9UBR4 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
LHX3Q9UBR4 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
LHX3Q9UBR4 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
LHX3Q9UBR4 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.6
LHX3Q9UBR4 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
LHX3Q9UBR4 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.6
LHX3Q9UBR4 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC5.09□□□□□ -1.6
LHX3Q9UBR4 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC5.09□□□□□ -1.6
LHX3Q9UBR4 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.6
LHX3Q9UBR4 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 INTS6P1-201ENST00000504674 2530 ntBASIC5.08□□□□□ -1.6
LHX3Q9UBR4 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.08□□□□□ -1.6
LHX3Q9UBR4 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 MGP-201ENST00000228938 694 ntTSL 3 BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms