Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC5.34□□□□□ -1.55
SIX2Q9NPC8 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SIX2Q9NPC8 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.34□□□□□ -1.55
SIX2Q9NPC8 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.34□□□□□ -1.55
SIX2Q9NPC8 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC5.34□□□□□ -1.55
SIX2Q9NPC8 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
SIX2Q9NPC8 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC5.34□□□□□ -1.56
SIX2Q9NPC8 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
SIX2Q9NPC8 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.34□□□□□ -1.56
SIX2Q9NPC8 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.34□□□□□ -1.56
SIX2Q9NPC8 THAP12P4-201ENST00000528321 2266 ntBASIC5.34□□□□□ -1.56
SIX2Q9NPC8 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
SIX2Q9NPC8 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SIX2Q9NPC8 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SIX2Q9NPC8 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SIX2Q9NPC8 TCP11X1-202ENST00000622971 1372 ntBASIC5.33□□□□□ -1.56
SIX2Q9NPC8 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.33□□□□□ -1.56
SIX2Q9NPC8 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SIX2Q9NPC8 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SIX2Q9NPC8 RNA5SP428-201ENST00000365129 132 ntBASIC5.33□□□□□ -1.56
SIX2Q9NPC8 MIR223-201ENST00000385204 110 ntBASIC5.33□□□□□ -1.56
SIX2Q9NPC8 AL357515.1-201ENST00000402967 542 ntBASIC5.33□□□□□ -1.56
SIX2Q9NPC8 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.33□□□□□ -1.56
SIX2Q9NPC8 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC5.33□□□□□ -1.56
SIX2Q9NPC8 AL163193.1-201ENST00000444895 788 ntBASIC5.33□□□□□ -1.56
SIX2Q9NPC8 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC5.33□□□□□ -1.56
SIX2Q9NPC8 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC5.33□□□□□ -1.56
SIX2Q9NPC8 RN7SL517P-201ENST00000462240 305 ntBASIC5.33□□□□□ -1.56
SIX2Q9NPC8 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.33□□□□□ -1.56
SIX2Q9NPC8 RPS18P6-201ENST00000476880 458 ntBASIC5.33□□□□□ -1.56
SIX2Q9NPC8 RN7SL30P-201ENST00000488416 306 ntBASIC5.33□□□□□ -1.56
SIX2Q9NPC8 HMGB3P16-201ENST00000508037 287 ntBASIC5.33□□□□□ -1.56
SIX2Q9NPC8 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC5.33□□□□□ -1.56
SIX2Q9NPC8 RNA5SP92-201ENST00000516437 110 ntBASIC5.33□□□□□ -1.56
SIX2Q9NPC8 NMNAT1P1-201ENST00000554095 876 ntBASIC5.33□□□□□ -1.56
SIX2Q9NPC8 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
SIX2Q9NPC8 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC5.33□□□□□ -1.56
SIX2Q9NPC8 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC5.33□□□□□ -1.56
SIX2Q9NPC8 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC5.33□□□□□ -1.56
SIX2Q9NPC8 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.33□□□□□ -1.56
SIX2Q9NPC8 CYCSP40-201ENST00000575927 294 ntBASIC5.33□□□□□ -1.56
SIX2Q9NPC8 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC5.33□□□□□ -1.56
SIX2Q9NPC8 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.33□□□□□ -1.56
SIX2Q9NPC8 AL049794.2-201ENST00000616301 365 ntBASIC5.33□□□□□ -1.56
SIX2Q9NPC8 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC5.33□□□□□ -1.56
SIX2Q9NPC8 AL163152.1-201ENST00000642001 374 ntBASIC5.33□□□□□ -1.56
SIX2Q9NPC8 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SIX2Q9NPC8 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 STX3-208ENST00000641815 3236 ntBASIC5.32□□□□□ -1.56
SIX2Q9NPC8 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 AC008549.2-201ENST00000333482 706 ntBASIC5.32□□□□□ -1.56
SIX2Q9NPC8 RNA5SP455-201ENST00000365190 119 ntBASIC5.32□□□□□ -1.56
SIX2Q9NPC8 TRAV35-201ENST00000390462 330 ntBASIC5.32□□□□□ -1.56
SIX2Q9NPC8 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 DNAJA1P4-201ENST00000406473 1166 ntBASIC5.32□□□□□ -1.56
SIX2Q9NPC8 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 AF186996.5-201ENST00000418098 904 ntBASIC5.32□□□□□ -1.56
SIX2Q9NPC8 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 AC106901.1-201ENST00000425086 698 ntBASIC5.32□□□□□ -1.56
SIX2Q9NPC8 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 AC114878.1-201ENST00000441166 358 ntBASIC5.32□□□□□ -1.56
SIX2Q9NPC8 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 RHEBP2-201ENST00000450289 600 ntBASIC5.32□□□□□ -1.56
SIX2Q9NPC8 AC005532.2-201ENST00000467154 373 ntBASIC5.32□□□□□ -1.56
SIX2Q9NPC8 SEPT7P6-201ENST00000469999 1143 ntBASIC5.32□□□□□ -1.56
SIX2Q9NPC8 AC090686.1-201ENST00000481577 749 ntBASIC5.32□□□□□ -1.56
SIX2Q9NPC8 RNA5SP303-201ENST00000516192 130 ntBASIC5.32□□□□□ -1.56
SIX2Q9NPC8 RN7SKP260-201ENST00000516907 149 ntBASIC5.32□□□□□ -1.56
SIX2Q9NPC8 EIF4A2P5-201ENST00000529914 499 ntBASIC5.32□□□□□ -1.56
SIX2Q9NPC8 AC006518.1-201ENST00000541449 943 ntBASIC5.32□□□□□ -1.56
SIX2Q9NPC8 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 AL731537.2-201ENST00000561565 951 ntBASIC5.32□□□□□ -1.56
SIX2Q9NPC8 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 MEMO1P5-201ENST00000604810 406 ntBASIC5.32□□□□□ -1.56
SIX2Q9NPC8 AC092574.1-201ENST00000609771 420 ntBASIC5.32□□□□□ -1.56
SIX2Q9NPC8 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 AL512624.1-201ENST00000613638 469 ntBASIC5.32□□□□□ -1.56
SIX2Q9NPC8 MIR6729-201ENST00000618194 65 ntBASIC5.32□□□□□ -1.56
SIX2Q9NPC8 AL022401.1-201ENST00000619498 108 ntBASIC5.32□□□□□ -1.56
SIX2Q9NPC8 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 FGG-205ENST00000407946 1636 ntTSL 5 BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SIX2Q9NPC8 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 143.6 ms