Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ZNF160-208ENST00000599056 4229 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 DCAF13-210ENST00000618975 2038 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 QTRT2-212ENST00000485050 3844 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 OR52K1-202ENST00000641528 5456 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 TRAF5-202ENST00000336184 3972 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 DCX-206ENST00000496551 1320 ntAPPRIS P4 TSL 2 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 OLR1-201ENST00000309539 2462 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AC140479.2-201ENST00000421567 3130 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 OR2AG2-202ENST00000641124 4224 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 OR2AG2-203ENST00000641169 4221 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 ADI1-202ENST00000382093 3870 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 OR4F17-201ENST00000318050 1054 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 CLEC4A-202ENST00000345999 841 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 Y_RNA.9-201ENST00000362354 101 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 RNU4-81P-201ENST00000363561 144 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 SERPINB12-202ENST00000382768 1278 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 Y_RNA.450-201ENST00000384198 113 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 FDPSP5-201ENST00000399474 1057 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 DHFRP6-201ENST00000401776 268 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 GSTA9P-201ENST00000406231 611 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 MIR1305-201ENST00000408300 86 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 RNA5SP177-201ENST00000410122 107 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AC009965.2-201ENST00000425328 970 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AL445669.1-201ENST00000426743 755 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 ISCA1P6-201ENST00000427740 390 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 ATP5LP4-201ENST00000434169 307 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 LINC01918-202ENST00000438148 415 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 RPL22P17-201ENST00000438729 315 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AC009237.4-201ENST00000441078 238 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 MTND6P13-201ENST00000443510 523 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 DBIL5P2-201ENST00000443827 253 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AC092421.1-201ENST00000448148 418 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 SNORA81.1-201ENST00000458922 177 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 RPL7P22-201ENST00000466005 733 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 GLYCTK-AS1-203ENST00000493616 445 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AC012170.1-201ENST00000495139 359 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AC112204.1-201ENST00000502591 103 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AC022447.3-201ENST00000506865 495 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 PTGES3P3-201ENST00000511479 482 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AL035458.2-201ENST00000512005 478 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 KCTD9P2-201ENST00000512203 1013 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AC005699.1-203ENST00000515286 688 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 TPM3P3-201ENST00000521343 354 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AP003084.1-201ENST00000524828 742 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AC104009.1-201ENST00000528009 635 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AC118273.2-201ENST00000532092 465 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AL121594.2-201ENST00000541658 472 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 TRIM69-204ENST00000558329 1211 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AC027801.5-201ENST00000574365 416 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AC012417.1-201ENST00000582307 1039 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AC010463.3-201ENST00000594077 500 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 BCRP9-201ENST00000605312 388 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AL591686.2-201ENST00000608241 475 ntTSL 4 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AL592295.2-201ENST00000612578 206 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 PFKM-232ENST00000629846 381 ntTSL 4 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 OR7E161P-202ENST00000641994 1033 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 LINC01776-201ENST00000418344 2229 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 MEPE-204ENST00000497649 2226 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AL359396.1-201ENST00000623151 2376 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 DPCR1-201ENST00000304311 2658 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 GABRA1-211ENST00000635880 1739 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 TRIM49B-202ENST00000622138 2162 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 ENTPD5-207ENST00000557325 3096 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 BX322650.1-201ENST00000332359 2143 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 ANAPC5-204ENST00000441917 2147 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 PWAR1-201ENST00000624188 2414 ntBASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AKR1C2-201ENST00000380753 3756 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 BRINP3-201ENST00000367462 3142 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 PPP4R3CP-201ENST00000412172 3131 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 ZNF699-201ENST00000308650 2094 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 CASC19-246ENST00000641625 1606 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 OR7G2-202ENST00000641081 3015 ntAPPRIS ALT2 BASIC5.52□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms