Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC5.34□□□□□ -1.55
VMP1Q96GC9 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC5.34□□□□□ -1.55
VMP1Q96GC9 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.34□□□□□ -1.55
VMP1Q96GC9 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.34□□□□□ -1.55
VMP1Q96GC9 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5.34□□□□□ -1.55
VMP1Q96GC9 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC5.34□□□□□ -1.55
VMP1Q96GC9 AC096996.1-201ENST00000563813 325 ntBASIC5.34□□□□□ -1.55
VMP1Q96GC9 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC5.34□□□□□ -1.55
VMP1Q96GC9 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.34□□□□□ -1.55
VMP1Q96GC9 AC012146.2-201ENST00000576545 416 ntBASIC5.34□□□□□ -1.55
VMP1Q96GC9 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.34□□□□□ -1.55
VMP1Q96GC9 NANOGP3-201ENST00000605855 286 ntBASIC5.34□□□□□ -1.55
VMP1Q96GC9 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC5.34□□□□□ -1.55
VMP1Q96GC9 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC5.34□□□□□ -1.55
VMP1Q96GC9 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC5.34□□□□□ -1.55
VMP1Q96GC9 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
VMP1Q96GC9 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
VMP1Q96GC9 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
VMP1Q96GC9 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.34□□□□□ -1.55
VMP1Q96GC9 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC5.34□□□□□ -1.55
VMP1Q96GC9 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
VMP1Q96GC9 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
VMP1Q96GC9 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC5.33□□□□□ -1.56
VMP1Q96GC9 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.33□□□□□ -1.56
VMP1Q96GC9 VN2R3P-201ENST00000422626 1412 ntBASIC5.33□□□□□ -1.56
VMP1Q96GC9 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
VMP1Q96GC9 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
VMP1Q96GC9 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
VMP1Q96GC9 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
VMP1Q96GC9 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC5.33□□□□□ -1.56
VMP1Q96GC9 AL159987.1-201ENST00000347911 293 ntBASIC5.33□□□□□ -1.56
VMP1Q96GC9 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
VMP1Q96GC9 MIR323A-201ENST00000362199 86 ntBASIC5.33□□□□□ -1.56
VMP1Q96GC9 RNA5SP46-201ENST00000362370 120 ntBASIC5.33□□□□□ -1.56
VMP1Q96GC9 SNORA64.1-201ENST00000362600 132 ntBASIC5.33□□□□□ -1.56
VMP1Q96GC9 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC5.33□□□□□ -1.56
VMP1Q96GC9 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
VMP1Q96GC9 RPS27AP11-201ENST00000402798 447 ntBASIC5.33□□□□□ -1.56
VMP1Q96GC9 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
VMP1Q96GC9 AC019050.1-201ENST00000418508 492 ntBASIC5.33□□□□□ -1.56
VMP1Q96GC9 RPL12P34-201ENST00000424532 479 ntBASIC5.33□□□□□ -1.56
VMP1Q96GC9 SUMO2P3-201ENST00000438311 288 ntBASIC5.33□□□□□ -1.56
VMP1Q96GC9 AC114878.1-201ENST00000441166 358 ntBASIC5.33□□□□□ -1.56
VMP1Q96GC9 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.33□□□□□ -1.56
VMP1Q96GC9 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC5.33□□□□□ -1.56
VMP1Q96GC9 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
VMP1Q96GC9 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.33□□□□□ -1.56
VMP1Q96GC9 HGF-207ENST00000453018 721 ntTSL 3 BASIC5.33□□□□□ -1.56
VMP1Q96GC9 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC5.33□□□□□ -1.56
VMP1Q96GC9 RPL7P48-201ENST00000461513 746 ntBASIC5.33□□□□□ -1.56
VMP1Q96GC9 AC092691.2-201ENST00000461787 803 ntBASIC5.33□□□□□ -1.56
VMP1Q96GC9 AC087672.1-201ENST00000479876 766 ntBASIC5.33□□□□□ -1.56
VMP1Q96GC9 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.33□□□□□ -1.56
VMP1Q96GC9 RN7SL273P-201ENST00000481561 299 ntBASIC5.33□□□□□ -1.56
VMP1Q96GC9 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC5.33□□□□□ -1.56
VMP1Q96GC9 SSX6-203ENST00000509958 336 ntTSL 3 BASIC5.33□□□□□ -1.56
VMP1Q96GC9 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.33□□□□□ -1.56
VMP1Q96GC9 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.33□□□□□ -1.56
VMP1Q96GC9 RNU6-1004P-201ENST00000516584 111 ntBASIC5.33□□□□□ -1.56
VMP1Q96GC9 SNORA43.3-201ENST00000517240 103 ntBASIC5.33□□□□□ -1.56
VMP1Q96GC9 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC5.33□□□□□ -1.56
VMP1Q96GC9 AL049870.4-201ENST00000555741 486 ntBASIC5.33□□□□□ -1.56
VMP1Q96GC9 DPPA2P4-201ENST00000563717 878 ntBASIC5.33□□□□□ -1.56
VMP1Q96GC9 AL390726.5-202ENST00000564800 256 ntBASIC5.33□□□□□ -1.56
VMP1Q96GC9 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.33□□□□□ -1.56
VMP1Q96GC9 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.33□□□□□ -1.56
VMP1Q96GC9 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
VMP1Q96GC9 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC5.33□□□□□ -1.56
VMP1Q96GC9 AL513327.3-201ENST00000602618 469 ntBASIC5.33□□□□□ -1.56
VMP1Q96GC9 BX322635.1-201ENST00000605804 496 ntBASIC5.33□□□□□ -1.56
VMP1Q96GC9 RN7SL787P-201ENST00000613000 284 ntBASIC5.33□□□□□ -1.56
VMP1Q96GC9 AC139769.3-201ENST00000618383 175 ntBASIC5.33□□□□□ -1.56
VMP1Q96GC9 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC5.33□□□□□ -1.56
VMP1Q96GC9 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
VMP1Q96GC9 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
VMP1Q96GC9 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
VMP1Q96GC9 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.33□□□□□ -1.56
VMP1Q96GC9 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC5.33□□□□□ -1.56
VMP1Q96GC9 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC5.32□□□□□ -1.56
VMP1Q96GC9 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.32□□□□□ -1.56
VMP1Q96GC9 Z95331.1-201ENST00000623075 23112 ntBASIC5.32□□□□□ -1.56
VMP1Q96GC9 MUC2-202ENST00000613187 4845 ntBASIC5.32□□□□□ -1.56
VMP1Q96GC9 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
VMP1Q96GC9 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
VMP1Q96GC9 RN7SKP269-201ENST00000365545 319 ntBASIC5.32□□□□□ -1.56
VMP1Q96GC9 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
VMP1Q96GC9 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
VMP1Q96GC9 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
VMP1Q96GC9 AC092642.1-201ENST00000392417 425 ntBASIC5.32□□□□□ -1.56
VMP1Q96GC9 RMRPP5-201ENST00000411156 267 ntBASIC5.32□□□□□ -1.56
VMP1Q96GC9 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.32□□□□□ -1.56
VMP1Q96GC9 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC5.32□□□□□ -1.56
VMP1Q96GC9 RPL12P28-201ENST00000430852 489 ntBASIC5.32□□□□□ -1.56
VMP1Q96GC9 AC002504.1-201ENST00000438281 691 ntBASIC5.32□□□□□ -1.56
VMP1Q96GC9 NDUFA5P8-201ENST00000449019 346 ntBASIC5.32□□□□□ -1.56
VMP1Q96GC9 YWHAEP1-201ENST00000453697 763 ntBASIC5.32□□□□□ -1.56
VMP1Q96GC9 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC5.32□□□□□ -1.56
VMP1Q96GC9 RPL23AP12-201ENST00000467573 473 ntBASIC5.32□□□□□ -1.56
VMP1Q96GC9 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC5.32□□□□□ -1.56
VMP1Q96GC9 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms