Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
LIM2P55344 AC063976.2-201ENST00000425667 3556 ntBASIC4.79□□□□□ -1.64
LIM2P55344 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
LIM2P55344 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.78□□□□□ -1.64
LIM2P55344 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LIM2P55344 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LIM2P55344 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
LIM2P55344 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.78□□□□□ -1.64
LIM2P55344 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LIM2P55344 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
LIM2P55344 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC4.78□□□□□ -1.64
LIM2P55344 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC4.78□□□□□ -1.64
LIM2P55344 UBE2V2P3-201ENST00000433562 437 ntBASIC4.78□□□□□ -1.64
LIM2P55344 AL627308.1-201ENST00000435693 821 ntBASIC4.78□□□□□ -1.64
LIM2P55344 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC4.78□□□□□ -1.64
LIM2P55344 RPL34P20-201ENST00000442771 351 ntBASIC4.78□□□□□ -1.64
LIM2P55344 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC4.78□□□□□ -1.64
LIM2P55344 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.78□□□□□ -1.64
LIM2P55344 AL354714.3-201ENST00000447284 493 ntBASIC4.78□□□□□ -1.64
LIM2P55344 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC4.78□□□□□ -1.64
LIM2P55344 NDUFA5P8-201ENST00000449019 346 ntBASIC4.78□□□□□ -1.64
LIM2P55344 OR6C72P-201ENST00000451403 892 ntBASIC4.78□□□□□ -1.64
LIM2P55344 RPSAP50-201ENST00000481955 852 ntBASIC4.78□□□□□ -1.64
LIM2P55344 AC109462.1-201ENST00000491087 368 ntBASIC4.78□□□□□ -1.64
LIM2P55344 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC4.78□□□□□ -1.64
LIM2P55344 AC004980.4-201ENST00000513375 203 ntBASIC4.78□□□□□ -1.64
LIM2P55344 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.78□□□□□ -1.64
LIM2P55344 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
LIM2P55344 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC4.78□□□□□ -1.64
LIM2P55344 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC4.78□□□□□ -1.64
LIM2P55344 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC4.78□□□□□ -1.64
LIM2P55344 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC4.78□□□□□ -1.64
LIM2P55344 EIF1AXP2-201ENST00000555940 413 ntBASIC4.78□□□□□ -1.64
LIM2P55344 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC4.78□□□□□ -1.64
LIM2P55344 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.78□□□□□ -1.64
LIM2P55344 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC4.78□□□□□ -1.64
LIM2P55344 AC105254.2-201ENST00000603636 436 ntBASIC4.78□□□□□ -1.64
LIM2P55344 AC016769.4-201ENST00000616893 535 ntBASIC4.78□□□□□ -1.64
LIM2P55344 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.78□□□□□ -1.64
LIM2P55344 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
LIM2P55344 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LIM2P55344 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LIM2P55344 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LIM2P55344 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
LIM2P55344 EEF1A1P36-201ENST00000427807 1351 ntBASIC4.78□□□□□ -1.64
LIM2P55344 AL672167.1-204ENST00000641875 3017 ntBASIC4.78□□□□□ -1.64
LIM2P55344 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.65
LIM2P55344 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
LIM2P55344 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
LIM2P55344 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC4.77□□□□□ -1.65
LIM2P55344 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
LIM2P55344 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.77□□□□□ -1.65
LIM2P55344 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4.77□□□□□ -1.65
LIM2P55344 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
LIM2P55344 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
LIM2P55344 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
LIM2P55344 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC4.77□□□□□ -1.65
LIM2P55344 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
LIM2P55344 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC4.77□□□□□ -1.65
LIM2P55344 RNA5SP507-201ENST00000363603 121 ntBASIC4.77□□□□□ -1.65
LIM2P55344 RNA5SP455-201ENST00000365190 119 ntBASIC4.77□□□□□ -1.65
LIM2P55344 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
LIM2P55344 SNORA66-201ENST00000384792 133 ntBASIC4.77□□□□□ -1.65
LIM2P55344 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
LIM2P55344 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC4.77□□□□□ -1.65
LIM2P55344 MRM2-202ENST00000407040 582 ntTSL 3 BASIC4.77□□□□□ -1.65
LIM2P55344 SNORA77-201ENST00000408716 125 ntBASIC4.77□□□□□ -1.65
LIM2P55344 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC4.77□□□□□ -1.65
LIM2P55344 RN7SKP213-201ENST00000410746 298 ntBASIC4.77□□□□□ -1.65
LIM2P55344 AC007738.1-201ENST00000413892 348 ntBASIC4.77□□□□□ -1.65
LIM2P55344 RFESDP1-201ENST00000422350 461 ntBASIC4.77□□□□□ -1.65
LIM2P55344 MYO5BP2-201ENST00000449815 1277 ntBASIC4.77□□□□□ -1.65
LIM2P55344 IGHV5-78-201ENST00000450948 295 ntBASIC4.77□□□□□ -1.65
LIM2P55344 HMGN1P8-201ENST00000463578 288 ntBASIC4.77□□□□□ -1.65
LIM2P55344 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC4.77□□□□□ -1.65
LIM2P55344 RN7SL244P-201ENST00000493405 297 ntBASIC4.77□□□□□ -1.65
LIM2P55344 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC4.77□□□□□ -1.65
LIM2P55344 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC4.77□□□□□ -1.65
LIM2P55344 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC4.77□□□□□ -1.65
LIM2P55344 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC4.77□□□□□ -1.65
LIM2P55344 AC008638.1-201ENST00000506035 866 ntBASIC4.77□□□□□ -1.65
LIM2P55344 COX6B1P5-201ENST00000509843 249 ntBASIC4.77□□□□□ -1.65
LIM2P55344 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC4.77□□□□□ -1.65
LIM2P55344 ATG10-208ENST00000513634 618 ntTSL 2 BASIC4.77□□□□□ -1.65
LIM2P55344 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC4.77□□□□□ -1.65
LIM2P55344 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC4.77□□□□□ -1.65
LIM2P55344 OR7E128P-201ENST00000532736 1024 ntBASIC4.77□□□□□ -1.65
LIM2P55344 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC4.77□□□□□ -1.65
LIM2P55344 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC4.77□□□□□ -1.65
LIM2P55344 AL512310.9-201ENST00000553311 948 ntBASIC4.77□□□□□ -1.65
LIM2P55344 NMNAT1P1-201ENST00000554095 876 ntBASIC4.77□□□□□ -1.65
LIM2P55344 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC4.77□□□□□ -1.65
LIM2P55344 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC4.77□□□□□ -1.65
LIM2P55344 MIR4433B-201ENST00000581329 102 ntBASIC4.77□□□□□ -1.65
LIM2P55344 AP000919.1-201ENST00000582850 985 ntBASIC4.77□□□□□ -1.65
LIM2P55344 AL627230.1-201ENST00000613077 211 ntBASIC4.77□□□□□ -1.65
LIM2P55344 AL591926.8-201ENST00000616876 211 ntBASIC4.77□□□□□ -1.65
LIM2P55344 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC4.77□□□□□ -1.65
LIM2P55344 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC4.77□□□□□ -1.65
LIM2P55344 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms