Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
PTPN9P43378 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
PTPN9P43378 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
PTPN9P43378 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
PTPN9P43378 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
PTPN9P43378 AL603750.1-201ENST00000624216 1717 ntBASIC5.6□□□□□ -1.51
PTPN9P43378 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
PTPN9P43378 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
PTPN9P43378 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC5.59□□□□□ -1.51
PTPN9P43378 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
PTPN9P43378 AL353796.1-201ENST00000561542 3241 ntBASIC5.59□□□□□ -1.51
PTPN9P43378 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
PTPN9P43378 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
PTPN9P43378 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
PTPN9P43378 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
PTPN9P43378 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
PTPN9P43378 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
PTPN9P43378 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
PTPN9P43378 RNU1-19P-201ENST00000363306 165 ntBASIC5.59□□□□□ -1.51
PTPN9P43378 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
PTPN9P43378 RNU6-925P-201ENST00000384629 104 ntBASIC5.59□□□□□ -1.51
PTPN9P43378 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
PTPN9P43378 RNA5SP339-201ENST00000390987 122 ntBASIC5.59□□□□□ -1.51
PTPN9P43378 RNA5SP241-201ENST00000391326 114 ntBASIC5.59□□□□□ -1.51
PTPN9P43378 AL512422.1-201ENST00000407033 553 ntBASIC5.59□□□□□ -1.51
PTPN9P43378 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.59□□□□□ -1.51
PTPN9P43378 CHEK2P5-201ENST00000423877 246 ntBASIC5.59□□□□□ -1.51
PTPN9P43378 HSPD1P12-201ENST00000429127 1069 ntBASIC5.59□□□□□ -1.51
PTPN9P43378 AL121776.1-201ENST00000429337 372 ntBASIC5.59□□□□□ -1.51
PTPN9P43378 CYCSP12-201ENST00000437729 300 ntBASIC5.59□□□□□ -1.51
PTPN9P43378 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.59□□□□□ -1.51
PTPN9P43378 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.59□□□□□ -1.51
PTPN9P43378 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC5.59□□□□□ -1.51
PTPN9P43378 AC079168.1-201ENST00000458741 345 ntBASIC5.59□□□□□ -1.51
PTPN9P43378 CBX1P5-201ENST00000475330 559 ntBASIC5.59□□□□□ -1.51
PTPN9P43378 AC058823.1-201ENST00000485315 474 ntBASIC5.59□□□□□ -1.51
PTPN9P43378 RN7SL423P-201ENST00000486202 304 ntBASIC5.59□□□□□ -1.51
PTPN9P43378 RN7SL184P-201ENST00000488308 297 ntBASIC5.59□□□□□ -1.51
PTPN9P43378 RPS12P31-201ENST00000491419 398 ntBASIC5.59□□□□□ -1.51
PTPN9P43378 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.59□□□□□ -1.51
PTPN9P43378 RNA5SP362-201ENST00000516048 118 ntBASIC5.59□□□□□ -1.51
PTPN9P43378 FTH1P11-201ENST00000517577 551 ntBASIC5.59□□□□□ -1.51
PTPN9P43378 IGLVIV-64-201ENST00000518581 301 ntBASIC5.59□□□□□ -1.51
PTPN9P43378 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC5.59□□□□□ -1.51
PTPN9P43378 HMGB1P40-201ENST00000525121 540 ntBASIC5.59□□□□□ -1.51
PTPN9P43378 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
PTPN9P43378 AP001804.2-201ENST00000533932 910 ntBASIC5.59□□□□□ -1.51
PTPN9P43378 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC5.59□□□□□ -1.51
PTPN9P43378 YWHABP2-201ENST00000540201 713 ntBASIC5.59□□□□□ -1.51
PTPN9P43378 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC5.59□□□□□ -1.51
PTPN9P43378 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC5.59□□□□□ -1.51
PTPN9P43378 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC5.59□□□□□ -1.51
PTPN9P43378 RBM22P1-201ENST00000578589 1214 ntBASIC5.59□□□□□ -1.51
PTPN9P43378 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.59□□□□□ -1.51
PTPN9P43378 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC5.59□□□□□ -1.51
PTPN9P43378 AC097504.2-201ENST00000608088 454 ntBASIC5.59□□□□□ -1.51
PTPN9P43378 AC018926.1-201ENST00000616335 435 ntBASIC5.59□□□□□ -1.51
PTPN9P43378 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.59□□□□□ -1.51
PTPN9P43378 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC5.59□□□□□ -1.51
PTPN9P43378 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
PTPN9P43378 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC5.59□□□□□ -1.51
PTPN9P43378 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
PTPN9P43378 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
PTPN9P43378 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
PTPN9P43378 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC5.59□□□□□ -1.51
PTPN9P43378 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.52
PTPN9P43378 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
PTPN9P43378 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
PTPN9P43378 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
PTPN9P43378 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.58□□□□□ -1.52
PTPN9P43378 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
PTPN9P43378 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC5.58□□□□□ -1.52
PTPN9P43378 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC5.58□□□□□ -1.52
PTPN9P43378 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
PTPN9P43378 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC5.58□□□□□ -1.52
PTPN9P43378 OR4K12P-201ENST00000406538 961 ntBASIC5.58□□□□□ -1.52
PTPN9P43378 AL390774.1-201ENST00000411924 246 ntBASIC5.58□□□□□ -1.52
PTPN9P43378 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.58□□□□□ -1.52
PTPN9P43378 AC092570.3-201ENST00000420113 693 ntBASIC5.58□□□□□ -1.52
PTPN9P43378 ARL2BPP3-201ENST00000421226 480 ntBASIC5.58□□□□□ -1.52
PTPN9P43378 RPL19P16-201ENST00000433839 588 ntBASIC5.58□□□□□ -1.52
PTPN9P43378 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.58□□□□□ -1.52
PTPN9P43378 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC5.58□□□□□ -1.52
PTPN9P43378 MTND6P32-201ENST00000457611 483 ntBASIC5.58□□□□□ -1.52
PTPN9P43378 RN7SL174P-201ENST00000475578 289 ntBASIC5.58□□□□□ -1.52
PTPN9P43378 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
PTPN9P43378 RN7SL101P-201ENST00000496350 279 ntBASIC5.58□□□□□ -1.52
PTPN9P43378 RPEP1-201ENST00000504507 658 ntBASIC5.58□□□□□ -1.52
PTPN9P43378 AC021087.2-201ENST00000504656 1203 ntBASIC5.58□□□□□ -1.52
PTPN9P43378 IMPA1P1-201ENST00000510718 842 ntBASIC5.58□□□□□ -1.52
PTPN9P43378 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.58□□□□□ -1.52
PTPN9P43378 MTND1P6-201ENST00000523621 946 ntBASIC5.58□□□□□ -1.52
PTPN9P43378 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.58□□□□□ -1.52
PTPN9P43378 CD69-203ENST00000536709 1020 ntTSL 2 BASIC5.58□□□□□ -1.52
PTPN9P43378 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
PTPN9P43378 AC093014.1-201ENST00000548926 724 ntBASIC5.58□□□□□ -1.52
PTPN9P43378 AC126177.5-201ENST00000549599 178 ntBASIC5.58□□□□□ -1.52
PTPN9P43378 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.58□□□□□ -1.52
PTPN9P43378 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.58□□□□□ -1.52
PTPN9P43378 AC012146.2-201ENST00000576545 416 ntBASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms