Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AL162574.2-201ENST00000614618 657 ntBASIC4.85□□□□□ -1.63
HOXD4P09016 AC006213.4-201ENST00000616184 634 ntBASIC4.85□□□□□ -1.63
HOXD4P09016 uc_338.7-201ENST00000621834 124 ntBASIC4.85□□□□□ -1.63
HOXD4P09016 AP002799.1-201ENST00000623552 423 ntBASIC4.85□□□□□ -1.63
HOXD4P09016 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC4.85□□□□□ -1.63
HOXD4P09016 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC4.85□□□□□ -1.63
HOXD4P09016 CASC19-221ENST00000641309 1382 ntBASIC4.85□□□□□ -1.63
HOXD4P09016 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
HOXD4P09016 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
HOXD4P09016 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC4.85□□□□□ -1.63
HOXD4P09016 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC4.84□□□□□ -1.63
HOXD4P09016 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
HOXD4P09016 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
HOXD4P09016 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
HOXD4P09016 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
HOXD4P09016 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
HOXD4P09016 AC011503.2-201ENST00000594230 1500 ntBASIC4.84□□□□□ -1.63
HOXD4P09016 AC092111.2-201ENST00000611627 1414 ntBASIC4.84□□□□□ -1.63
HOXD4P09016 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.84□□□□□ -1.63
HOXD4P09016 EEF1A1P33-201ENST00000554413 1362 ntBASIC4.84□□□□□ -1.63
HOXD4P09016 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
HOXD4P09016 AC092681.1-201ENST00000297369 291 ntBASIC4.84□□□□□ -1.63
HOXD4P09016 AL589826.1-201ENST00000340697 249 ntBASIC4.84□□□□□ -1.63
HOXD4P09016 SNORA17.1-201ENST00000362945 126 ntBASIC4.84□□□□□ -1.63
HOXD4P09016 RNU1-149P-201ENST00000390870 161 ntBASIC4.84□□□□□ -1.63
HOXD4P09016 AC136624.1-201ENST00000400791 413 ntBASIC4.84□□□□□ -1.63
HOXD4P09016 HSPA8P15-201ENST00000401676 786 ntBASIC4.84□□□□□ -1.63
HOXD4P09016 AL359643.1-201ENST00000404109 423 ntBASIC4.84□□□□□ -1.63
HOXD4P09016 AL133388.1-201ENST00000404509 287 ntBASIC4.84□□□□□ -1.63
HOXD4P09016 ZNF92P1Y-201ENST00000415010 1191 ntBASIC4.84□□□□□ -1.63
HOXD4P09016 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC4.84□□□□□ -1.63
HOXD4P09016 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC4.84□□□□□ -1.63
HOXD4P09016 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.84□□□□□ -1.63
HOXD4P09016 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC4.84□□□□□ -1.63
HOXD4P09016 AC073850.1-201ENST00000449243 255 ntBASIC4.84□□□□□ -1.63
HOXD4P09016 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC4.84□□□□□ -1.63
HOXD4P09016 HESX1-202ENST00000473921 757 ntTSL 5 BASIC4.84□□□□□ -1.63
HOXD4P09016 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC4.84□□□□□ -1.63
HOXD4P09016 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC4.84□□□□□ -1.63
HOXD4P09016 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC4.84□□□□□ -1.63
HOXD4P09016 GAPDHP62-201ENST00000515313 990 ntBASIC4.84□□□□□ -1.63
HOXD4P09016 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.84□□□□□ -1.63
HOXD4P09016 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC4.84□□□□□ -1.63
HOXD4P09016 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC4.84□□□□□ -1.63
HOXD4P09016 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC4.84□□□□□ -1.63
HOXD4P09016 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC4.84□□□□□ -1.63
HOXD4P09016 AC006116.3-201ENST00000592968 361 ntBASIC4.84□□□□□ -1.63
HOXD4P09016 AC245128.3-201ENST00000594721 748 ntBASIC4.84□□□□□ -1.63
HOXD4P09016 BX322635.1-201ENST00000605804 496 ntBASIC4.84□□□□□ -1.63
HOXD4P09016 AC109583.2-201ENST00000617367 129 ntBASIC4.84□□□□□ -1.63
HOXD4P09016 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC4.84□□□□□ -1.63
HOXD4P09016 AC090527.3-201ENST00000619041 548 ntBASIC4.84□□□□□ -1.63
HOXD4P09016 AP001784.1-201ENST00000624107 428 ntBASIC4.84□□□□□ -1.63
HOXD4P09016 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC4.84□□□□□ -1.63
HOXD4P09016 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC4.84□□□□□ -1.63
HOXD4P09016 AC099654.6-201ENST00000636487 512 ntBASIC4.84□□□□□ -1.63
HOXD4P09016 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
HOXD4P09016 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
HOXD4P09016 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
HOXD4P09016 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC4.84□□□□□ -1.64
HOXD4P09016 AC005005.4-201ENST00000623789 16698 ntBASIC4.84□□□□□ -1.64
HOXD4P09016 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HOXD4P09016 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC4.83□□□□□ -1.64
HOXD4P09016 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXD4P09016 RNU6-249P-201ENST00000363016 102 ntBASIC4.83□□□□□ -1.64
HOXD4P09016 RN7SKP103-201ENST00000363848 320 ntBASIC4.83□□□□□ -1.64
HOXD4P09016 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC4.83□□□□□ -1.64
HOXD4P09016 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC4.83□□□□□ -1.64
HOXD4P09016 AL133482.1-201ENST00000415988 498 ntBASIC4.83□□□□□ -1.64
HOXD4P09016 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC4.83□□□□□ -1.64
HOXD4P09016 RPA2P2-201ENST00000419698 796 ntBASIC4.83□□□□□ -1.64
HOXD4P09016 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC4.83□□□□□ -1.64
HOXD4P09016 AC012519.1-201ENST00000424588 610 ntBASIC4.83□□□□□ -1.64
HOXD4P09016 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC4.83□□□□□ -1.64
HOXD4P09016 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HOXD4P09016 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC4.83□□□□□ -1.64
HOXD4P09016 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC4.83□□□□□ -1.64
HOXD4P09016 PSMD10P3-201ENST00000437000 448 ntBASIC4.83□□□□□ -1.64
HOXD4P09016 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC4.83□□□□□ -1.64
HOXD4P09016 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC4.83□□□□□ -1.64
HOXD4P09016 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HOXD4P09016 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC4.83□□□□□ -1.64
HOXD4P09016 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC4.83□□□□□ -1.64
HOXD4P09016 AL049829.1-201ENST00000465411 156 ntBASIC4.83□□□□□ -1.64
HOXD4P09016 AGGF1P3-201ENST00000493675 1213 ntBASIC4.83□□□□□ -1.64
HOXD4P09016 RPS17P5-201ENST00000498293 408 ntBASIC4.83□□□□□ -1.64
HOXD4P09016 RPS4XP20-201ENST00000505751 772 ntBASIC4.83□□□□□ -1.64
HOXD4P09016 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC4.83□□□□□ -1.64
HOXD4P09016 HIGD1AP5-201ENST00000529959 259 ntBASIC4.83□□□□□ -1.64
HOXD4P09016 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC4.83□□□□□ -1.64
HOXD4P09016 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC4.83□□□□□ -1.64
HOXD4P09016 TAS2R6P-201ENST00000605022 826 ntBASIC4.83□□□□□ -1.64
HOXD4P09016 AL136370.1-201ENST00000608166 691 ntBASIC4.83□□□□□ -1.64
HOXD4P09016 AC010632.3-201ENST00000611377 369 ntBASIC4.83□□□□□ -1.64
HOXD4P09016 MIR6820-201ENST00000611508 62 ntBASIC4.83□□□□□ -1.64
HOXD4P09016 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXD4P09016 AL034549.2-201ENST00000618285 3373 ntBASIC4.83□□□□□ -1.64
HOXD4P09016 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HOXD4P09016 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.83□□□□□ -1.64
HOXD4P09016 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms