Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
BEST3Q8N1M1 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
BEST3Q8N1M1 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
BEST3Q8N1M1 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
BEST3Q8N1M1 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.14■□□□□ 0.49
BEST3Q8N1M1 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
BEST3Q8N1M1 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
BEST3Q8N1M1 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
BEST3Q8N1M1 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
BEST3Q8N1M1 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
BEST3Q8N1M1 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
BEST3Q8N1M1 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
BEST3Q8N1M1 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.13■□□□□ 0.49
BEST3Q8N1M1 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
BEST3Q8N1M1 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
BEST3Q8N1M1 AC087499.1-201ENST00000418141 1075 ntBASIC18.13■□□□□ 0.49
BEST3Q8N1M1 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
BEST3Q8N1M1 YBX1P10-201ENST00000444752 975 ntBASIC18.13■□□□□ 0.49
BEST3Q8N1M1 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18.13■□□□□ 0.49
BEST3Q8N1M1 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.13■□□□□ 0.49
BEST3Q8N1M1 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.13■□□□□ 0.49
BEST3Q8N1M1 LINC01023-201ENST00000606054 436 ntBASIC18.13■□□□□ 0.49
BEST3Q8N1M1 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.13■□□□□ 0.49
BEST3Q8N1M1 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.13■□□□□ 0.49
BEST3Q8N1M1 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
BEST3Q8N1M1 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
BEST3Q8N1M1 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
BEST3Q8N1M1 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
BEST3Q8N1M1 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
BEST3Q8N1M1 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
BEST3Q8N1M1 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
BEST3Q8N1M1 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BEST3Q8N1M1 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BEST3Q8N1M1 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
BEST3Q8N1M1 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BEST3Q8N1M1 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.12■□□□□ 0.49
BEST3Q8N1M1 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.12■□□□□ 0.49
BEST3Q8N1M1 AC020907.5-201ENST00000624372 1936 ntBASIC18.12■□□□□ 0.49
BEST3Q8N1M1 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
BEST3Q8N1M1 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
BEST3Q8N1M1 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BEST3Q8N1M1 KSR1P1-201ENST00000446298 240 ntBASIC18.12■□□□□ 0.49
BEST3Q8N1M1 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BEST3Q8N1M1 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.12■□□□□ 0.49
BEST3Q8N1M1 NUDT16P1-203ENST00000513809 620 ntBASIC18.12■□□□□ 0.49
BEST3Q8N1M1 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.12■□□□□ 0.49
BEST3Q8N1M1 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.12■□□□□ 0.49
BEST3Q8N1M1 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.12■□□□□ 0.49
BEST3Q8N1M1 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
BEST3Q8N1M1 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
BEST3Q8N1M1 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BEST3Q8N1M1 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BEST3Q8N1M1 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BEST3Q8N1M1 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
BEST3Q8N1M1 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BEST3Q8N1M1 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
BEST3Q8N1M1 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.12■□□□□ 0.49
BEST3Q8N1M1 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 C1QL1P1-201ENST00000568105 661 ntBASIC18.11■□□□□ 0.49
BEST3Q8N1M1 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 AC133561.5-201ENST00000635547 218 ntBASIC18.11■□□□□ 0.49
BEST3Q8N1M1 KRT16P1-201ENST00000399124 1418 ntBASIC18.11■□□□□ 0.49
BEST3Q8N1M1 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 BX119927.1-201ENST00000636596 1552 ntBASIC18.11■□□□□ 0.49
BEST3Q8N1M1 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.11■□□□□ 0.49
BEST3Q8N1M1 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms