Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
ABCA4P78363 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
ABCA4P78363 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
ABCA4P78363 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
ABCA4P78363 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ABCA4P78363 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC16.83■□□□□ 0.28
ABCA4P78363 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC16.83■□□□□ 0.28
ABCA4P78363 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC16.83■□□□□ 0.28
ABCA4P78363 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC16.83■□□□□ 0.28
ABCA4P78363 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.83■□□□□ 0.28
ABCA4P78363 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
ABCA4P78363 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ABCA4P78363 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC16.83■□□□□ 0.28
ABCA4P78363 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
ABCA4P78363 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ABCA4P78363 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
ABCA4P78363 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC16.83■□□□□ 0.28
ABCA4P78363 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
ABCA4P78363 ME2-216ENST00000639850 2331 ntTSL 5 BASIC16.83■□□□□ 0.28
ABCA4P78363 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
ABCA4P78363 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ABCA4P78363 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
ABCA4P78363 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ABCA4P78363 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ABCA4P78363 RNF152P1-201ENST00000397754 604 ntBASIC16.82■□□□□ 0.28
ABCA4P78363 BX664615.1-201ENST00000443558 458 ntBASIC16.82■□□□□ 0.28
ABCA4P78363 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC16.82■□□□□ 0.28
ABCA4P78363 AC116407.4-201ENST00000623319 1061 ntBASIC16.82■□□□□ 0.28
ABCA4P78363 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ABCA4P78363 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ABCA4P78363 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ABCA4P78363 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC16.82■□□□□ 0.28
ABCA4P78363 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ABCA4P78363 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
ABCA4P78363 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
ABCA4P78363 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
ABCA4P78363 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC16.82■□□□□ 0.28
ABCA4P78363 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ABCA4P78363 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ABCA4P78363 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ABCA4P78363 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ABCA4P78363 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ABCA4P78363 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
ABCA4P78363 KRT18P16-201ENST00000510337 1294 ntBASIC16.82■□□□□ 0.28
ABCA4P78363 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.82■□□□□ 0.28
ABCA4P78363 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ABCA4P78363 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
ABCA4P78363 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ABCA4P78363 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
ABCA4P78363 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
ABCA4P78363 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA4P78363 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA4P78363 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.81■□□□□ 0.28
ABCA4P78363 AC008040.2-201ENST00000461049 708 ntBASIC16.81■□□□□ 0.28
ABCA4P78363 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA4P78363 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
ABCA4P78363 AL138966.2-201ENST00000621997 464 ntBASIC16.81■□□□□ 0.28
ABCA4P78363 CLN6-221ENST00000637494 765 ntTSL 5 BASIC16.81■□□□□ 0.28
ABCA4P78363 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA4P78363 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC16.81■□□□□ 0.28
ABCA4P78363 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA4P78363 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA4P78363 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA4P78363 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA4P78363 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA4P78363 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA4P78363 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA4P78363 CLN6-204ENST00000564752 900 ntTSL 3 BASIC16.81■□□□□ 0.28
ABCA4P78363 SLC25A1P4-201ENST00000567977 778 ntBASIC16.81■□□□□ 0.28
ABCA4P78363 CYGB-204ENST00000589342 815 ntTSL 3 BASIC16.81■□□□□ 0.28
ABCA4P78363 AL023803.3-201ENST00000615559 522 ntBASIC16.81■□□□□ 0.28
ABCA4P78363 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC16.81■□□□□ 0.28
ABCA4P78363 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA4P78363 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA4P78363 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
ABCA4P78363 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA4P78363 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ABCA4P78363 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
ABCA4P78363 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ABCA4P78363 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
ABCA4P78363 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ABCA4P78363 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
ABCA4P78363 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC16.8■□□□□ 0.28
ABCA4P78363 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ABCA4P78363 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
ABCA4P78363 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.8■□□□□ 0.28
ABCA4P78363 AC011558.1-201ENST00000623459 338 ntBASIC16.8■□□□□ 0.28
ABCA4P78363 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC16.8■□□□□ 0.28
ABCA4P78363 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC16.8■□□□□ 0.28
ABCA4P78363 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
ABCA4P78363 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ABCA4P78363 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ABCA4P78363 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ABCA4P78363 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ABCA4P78363 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ABCA4P78363 AC026396.1-201ENST00000419388 421 ntBASIC16.8■□□□□ 0.28
ABCA4P78363 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ABCA4P78363 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.8■□□□□ 0.28
ABCA4P78363 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ABCA4P78363 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms